Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00005 ATGAAGAAGGAAGCCTACTCCAATCTCTCACTTCTCATTGCCTTGTTTCTAGGCACACTCTCACTTTCCCTCTGTGCCCCAAACCAAGGCAATGGAGAACTCACCGACACTGAAGCCATGTACATCAGGCAACGCCAGCTTCTGTACTATAGAGACGAGTTTGGCGACAGAGGAGAGAATGTCACCATAGACCCATCTCTTGTATTCGAGAATGACCGCATCAGAAATGCTTATATAGCATTGCAAGCTTGGAAGCAAGCCATTCTCTCGGATCCCCAGAACCTCACGGCTAACTGGGTTGGATCCAATGTGTGCAACTATTCCGGGGTTTACTGTGCTCCTGCGCTGGACAACCCCAGGATCCGCACGGTTGCAGGCATTGATCTTAACCACGGAGACATTGCTGGTTACTTGCCAGAAGAGCTTGGGTTGTTGCAGGATCTTGCTCTGTTTCACATAAACTCCAATAGATTCTGCGGCACCTTGCCTCACAGGTTTGATAGACTGAAGCTGCTCTTCGAGTTGGATCTCAGTAACAACAGATTAGCAGGCAAGTTTCCAGAAGTGGTTTTGCGGCTTCCAACGCTTAAATTTTTGGATCTCAGATTCAATGAATTCGAAGGGAGTGTGCCCAAGGAGCTGTTCGACAAGGATTTAGATGCCATTTTCATCAATGACAACCGCTTTGTGTTCGATATTCCTGATAACATTGGCAACTCGCCAGTTTCAGTTATAGTTCTTGCAAACAACAGGTTCCGCGGGTGTATTCCGGCGAGTTTGGGAAACATGTCGAACTTGAACGAGATCATTCTGATGAACAATGCACTCCGTTCGTGCTTGCCTTCGGAGATTGGGTTGTTGAAGAACCTGACGGTGTTCGACGTGAGCTTCAATCAGCTACTTGGTCCCTTGCCGTACACCATTGGAGGCATGGTGAGTCTGGAGCAGTTGGATGTGGCTCACAATTTTCTGTCTGGTAAAATCCCAGCGAGCATTTGCATGTTGCCTAACCTTAAGAACTTCACGTATTCGTATAACTTCTTCACCGGTGAGCCTCCGGCGTGCCTGAGCTTGCCGGCTTTTGATGACAGGAAGAACTGCTTGCCGGCGAGGCCGTTGCAGAGGTCTCCGGCGCAATGTAAGTCGTTCTTGTCTAAGCCTGTTGACTGTAACTCGTTTGGCTGTAAACCATTTGTTCCTTCGCCTCCTGGACCACCCGTTTATCCTTATTTATCACCGCCACCTCCTCCCCCTTTCCATTCACCACCACCTTGTGAAGAGCATTCACCCCCGCCGCCACCACCACCTTCTCCCGCACCTTACCTGCCATCACCCTCCCCATATCCACCGACGCCACCAGTGTATGTTTCTCCACCTCCACCGGTTCAATATAGCTCCCCACCACCACCACCACCACCACCCCCACCCCCTGTTCATTACAGTTCACCACCACCACCACCACCTCCTGTTCATTACAGTTCACCACCGCCACCACCTCCAGTTCATTACAGTTCTCCACCGCCACCGGTTTACCATTCTCCGCCGCCAGCATCACCGCCTCCATGCGAAACTCCACCCTCTGCCTCTCCGCCTCCACCAGTTGTATACGGAAACCCACCACCTGCTCCTGTATATGAAGGGCCATTGCCACCTATCTCTGGAGTCTCGTACGCATCTCCTCCACCACCACCTTTCTATTGA 1701 0.5103 MKKEAYSNLSLLIALFLGTLSLSLCAPNQGNGELTDTEAMYIRQRQLLYYRDEFGDRGENVTIDPSLVFENDRIRNAYIALQAWKQAILSDPQNLTANWVGSNVCNYSGVYCAPALDNPRIRTVAGIDLNHGDIAGYLPEELGLLQDLALFHINSNRFCGTLPHRFDRLKLLFELDLSNNRLAGKFPEVVLRLPTLKFLDLRFNEFEGSVPKELFDKDLDAIFINDNRFVFDIPDNIGNSPVSVIVLANNRFRGCIPASLGNMSNLNEIILMNNALRSCLPSEIGLLKNLTVFDVSFNQLLGPLPYTIGGMVSLEQLDVAHNFLSGKIPASICMLPNLKNFTYSYNFFTGEPPACLSLPAFDDRKNCLPARPLQRSPAQCKSFLSKPVDCNSFGCKPFVPSPPGPPVYPYLSPPPPPPFHSPPPCEEHSPPPPPPPSPAPYLPSPSPYPPTPPVYVSPPPPVQYSSPPPPPPPPPPPVHYSSPPPPPPPVHYSSPPPPPPVHYSSPPPPVYHSPPPASPPPCETPPSASPPPPVVYGNPPPAPVYEGPLPPISGVSYASPPPPPFY 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00005 566 Pfam Leucine Rich Repeat 313 333 IPR001611 GO:0005515
Gabi4436g00005 566 Gene3D Ribonuclease Inhibitor 78 237 IPR032675 -
Gabi4436g00005 566 FunFam Leucine-rich repeat extensin-like protein 5 240 379 - -
Gabi4436g00005 566 FunFam Leucine-rich repeat extensin-like protein 1 78 239 - -
Gabi4436g00005 566 MobiDBLite consensus disorder prediction 419 566 - -
Gabi4436g00005 566 Pfam Leucine rich repeat N-terminal domain 80 112 IPR013210 -
Gabi4436g00005 566 PRINTS Proline rich extensin signature 430 447 - -
Gabi4436g00005 566 PRINTS Proline rich extensin signature 402 418 - -
Gabi4436g00005 566 PRINTS Proline rich extensin signature 449 474 - -
Gabi4436g00005 566 Gene3D Ribonuclease Inhibitor 238 372 IPR032675 -
Gabi4436g00005 566 SUPERFAMILY L domain-like 78 360 - -
Gabi4436g00005 566 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 22 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00005 Gabi-Chr4436 36220 38601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00005 478 566 Trihelix Transcription Factor Family AT4G18670 45.045 5.54e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00005 - - qsa:O6P43_007947 676.781