Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00004 ATGAAGAAGGAAGCCTACTCCAATCTCTCACTTCTCATTGCCTTGTTTCTAGGCACACTCTCACTTTCCCTCTGTGCCCCAAACCAAGGCAATGGAGAACTCACCGACACTGAAGCCATGTACATCAGGCAACGCCAGCTTCTGTACTATAGAGACGAGTTTGGCGACAGAGGAGAGAATGTCACCATAGACCCATCTCTTGTATTCGAGAATGACCGCATCAGAAATGCTTATATAGCATTGCAAGCTTGGAAGCAAGCCATTCTCTCGGATCCCCAGAACCTCACGGCTAACTGGGTTGGATCCAATGTGTGCAACTATTCCGGGGTTTACTGTGCTCCTGCGCTGGACAACCCCAGGATCCGCACGGTTGCAGGCATTGATCTTAACCACGGAGACATTGCTGGTTACTTGCCAGAAGAGCTTGGGTTGTTGCAGGATCTTGCTCTGTTTCACATAAACTCCAATAGATTCTGCGGCACCTTGCCTCACAGGTTTGATAGACTGAAGCTGCTCTTCGAGTTGGATCTCAGTAACAACAGATTAGCAGGCAAGTTTCCAGAAGTGGTTTTGCGGCTTCCAACGCTTAAATTTTTGGATCTCAGATTCAATGAATTCGAAGGGAGTGTGCCCAAGGAGCTGTTCGACAAGGATTTAGATGCCATTTTCATCAATGACAACCGCTTTGTGTTCGATATTCCTGATAACATTGGCAACTCGCCAGTTTCAGTTATAGTTCTTGCAAACAACAGGTTCCGCGGGTGTATTCCGGCGAGTTTGGGAAACATGTCGAACTTGAACGAGATCATTCTGATGAACAATGCACTCCGTTCGTGCTTGCCTTCGGAGATTGGGTTGTTGAAGAACCTGACGGTGTTCGACGTGAGCTTCAATCAGCTACTTGGTCCCTTGCCGTACACCATTGGAGGCATGGTGAGTCTGGAGCAGTTGGATGTGGCTCACAATTTTCTGTCTGGTAAAATCCCAGCGAGCATTTGCATGTTGCCTAACCTTAAGAACTTCACGTATTCGTATAACTTCTTCACCGGTGAGCCTCCGGCGTGCCTGAGCTTGCCGGCTTTTGATGACAGGAAGAACTGCTTGCCGGCGAGGCCGTTGCAGAGGTCTCCGGCGCAATGTAAGTCGTTCTTGTCTAAGCCTGTTGACTGTAACTCGTTTGGCTGTAAACCATTTGTTCCTTCGCCTCCTGGAGTGGTGGTACCTTCACCCTCACCGCCTATAGTGCATTCACCCCCGCCGCCACCACCACCTTCTCCCGCACCTTACCTGCCATCACCCTCCCCATATCCACCGACGCCACCAGTGTATGTTTCTCCACCTCCACCGGTTCAATATAGCTCCCCACCACCACCACCACCACCACCCCCACCCCCTGTTCATTACAGTTCACCACCACCACCACCACCTCCTGTTCATTACAGTTCACCACCGCCACCACCTCCAGTTCATTACAGTTCTCCCCCACCACCTGCTCCTGTATATGAAGGGCCATTGCCACCTATCTCTGGAGTCTCGTACGCATCTCCTCCACCACCACCTTTCTATTGA 1569 0.5054 MKKEAYSNLSLLIALFLGTLSLSLCAPNQGNGELTDTEAMYIRQRQLLYYRDEFGDRGENVTIDPSLVFENDRIRNAYIALQAWKQAILSDPQNLTANWVGSNVCNYSGVYCAPALDNPRIRTVAGIDLNHGDIAGYLPEELGLLQDLALFHINSNRFCGTLPHRFDRLKLLFELDLSNNRLAGKFPEVVLRLPTLKFLDLRFNEFEGSVPKELFDKDLDAIFINDNRFVFDIPDNIGNSPVSVIVLANNRFRGCIPASLGNMSNLNEIILMNNALRSCLPSEIGLLKNLTVFDVSFNQLLGPLPYTIGGMVSLEQLDVAHNFLSGKIPASICMLPNLKNFTYSYNFFTGEPPACLSLPAFDDRKNCLPARPLQRSPAQCKSFLSKPVDCNSFGCKPFVPSPPGVVVPSPSPPIVHSPPPPPPPSPAPYLPSPSPYPPTPPVYVSPPPPVQYSSPPPPPPPPPPPVHYSSPPPPPPPVHYSSPPPPPPVHYSSPPPPAPVYEGPLPPISGVSYASPPPPPFY 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00004 522 FunFam Leucine-rich repeat extensin-like protein 1 78 239 - -
Gabi4436g00004 522 Pfam Leucine Rich Repeat 313 333 IPR001611 GO:0005515
Gabi4436g00004 522 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 22 520 - -
Gabi4436g00004 522 SUPERFAMILY L domain-like 78 360 - -
Gabi4436g00004 522 Gene3D Ribonuclease Inhibitor 238 369 IPR032675 -
Gabi4436g00004 522 PRINTS Proline rich extensin signature 392 413 - -
Gabi4436g00004 522 PRINTS Proline rich extensin signature 437 454 - -
Gabi4436g00004 522 PRINTS Proline rich extensin signature 420 436 - -
Gabi4436g00004 522 PRINTS Proline rich extensin signature 456 481 - -
Gabi4436g00004 522 FunFam Leucine-rich repeat extensin-like protein 5 240 379 - -
Gabi4436g00004 522 Pfam Leucine rich repeat N-terminal domain 80 112 IPR013210 -
Gabi4436g00004 522 Gene3D Ribonuclease Inhibitor 78 237 IPR032675 -
Gabi4436g00004 522 MobiDBLite consensus disorder prediction 447 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00004 Gabi-Chr4436 36220 38601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00004 443 522 Trihelix Transcription Factor Family AT4G18670 48.276 5.39e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00004 - - qsa:O6P43_007947 676.781