Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00003 ATGAAGAAGGAAGCCTACTCCAATCTCTCACTTCTCATTGCCTTGTTTCTAGGCACACTCTCACTTTCCCTCTGTGCCCCAAACCAAGGCAATGGAGAACTCACCGACACTGAAGCCATGTACATCAGGCAACGCCAGCTTCTGTACTATAGAGACGAGTTTGGCGACAGAGGAGAGAATGTCACCATAGACCCATCTCTTGTATTCGAGAATGACCGCATCAGAAATGCTTATATAGCATTGCAAGCTTGGAAGCAAGCCATTCTCTCGGATCCCCAGAACCTCACGGCTAACTGGGTTGGATCCAATGTGTGCAACTATTCCGGGGTTTACTGTGCTCCTGCGCTGGACAACCCCAGGATCCGCACGGTTGCAGGCATTGATCTTAACCACGGAGACATTGCTGGTTACTTGCCAGAAGAGCTTGGGTTGTTGCAGGATCTTGCTCTGTTTCACATAAACTCCAATAGATTCTGCGGCACCTTGCCTCACAGGTTTGATAGACTGAAGCTGCTCTTCGAGTTGGATCTCAGTAACAACAGATTAGCAGGCAAGTTTCCAGAAGTGGTTTTGCGGCTTCCAACGCTTAAATTTTTGGATCTCAGATTCAATGAATTCGAAGGGAGTGTGCCCAAGGAGCTGTTCGACAAGGATTTAGATGCCATTTTCATCAATGACAACCGCTTTGTGTTCGATATTCCTGATAACATTGGCAACTCGCCAGTTTCAGTTATAGTTCTTGCAAACAACAGGTTCCGCGGGTGTATTCCGGCGAGTTTGGGAAACATGTCGAACTTGAACGAGATCATTCTGATGAACAATGCACTCCGTTCGTGCTTGCCTTCGGAGATTGGGTTGTTGAAGAACCTGACGGTGTTCGACGTGAGCTTCAATCAGCTACTTGGTCCCTTGCCGTACACCATTGGAGGCATGGTGAGTCTGGAGCAGTTGGATGTGGCTCACAATTTTCTGTCTGGTAAAATCCCAGCGAGCATTTGCATGTTGCCTAACCTTAAGAACTTCACGTATTCGTATAACTTCTTCACCGGTGAGCCTCCGGCGTGCCTGAGCTTGCCGGCTTTTGATGACAGGAAGAACTGCTTGCCGGCGAGGCCGTTGCAGAGGTCTCCGGCGCAATGTAAGTCGTTCTTGTCTAAGCCTGTTGACTGTAACTCGTTTGGCTGTAAACCATTTGTTCCTTCGCCTCCTGGAGTGGTGGTACCTTCACCCTCACCGCCTATAGTGGTGCCGTCACCTACACCATCACCGCCTGGAGTGGTACCTTCACCGTCACCGCCTACAATGGTGCCTTCACCGTCACCGCCTGGAGTGGAACCTTCACCATCACCGCCCTCAGGGGTGCCTTCACCGTCACCGCCTATAATGGTGCCTTCACCTACACCATCACCGCCTGGAGCGGTACCTTCACCTACACCTCCCTCATGGGTGCCTTCACCATCACCGCCCTCAGGGGTACCTTCACCATCACCGCCCTCAGGGGTGCCTTCATCGCCGCCACCAGTGTCCTCTCCACCTGTGTATTCGCCACCTTCACCTCCACCACCTGTTTATACTCCACCATCGTCGCCACCGATGTACTTTCCTCCACCTGTGTATTCACCACCATCACCGCCTCTTTCACCTTCACCATTGCCGTCTCCACCATCCTCACCTACTCCCACACCACCATCTGGTAACTGGTCTCCGCCGCCGCCACCAAGTTCACCATCACCCCCTGGTCCCATATTCTCCTCACCACCAACTTCTCCTTATCATAGCTCACCGCCACCTCCAACTCATTCACCTTCACCACCCCCTAACTCACCCCAGCCACCCGTTTATCCTTATTTATCACCGCCACCTCCTCCCCCTTTCCATTCACCACCACCTTGTGAAGAGCATTCACCCCCGCCGCCACCACCACCTTCTCCCGCACCTTACCTGCCATCACCCTCCCCATATCCACCGACGCCACCAGTGTATGTTTCTCCACCTCCACCGGTTCAATATAGCTCCCCACCACCACCACCACCACCACCCCCACCCCCTGTTCATTACAGTTCACCACCACCACCACCACCTCCTGTTCATTACAGTTCACCACCGCCACCACCTCCAGTTCATTACAGTTCTCCACCGCCACCGGTTTACCATTCTCCGCCGCCAGCATCACCGCCTCCATGCGAAACTCCACCCTCTGCCTCTCCGCCTCCACCAGTTGTATACGGAAACCCACCACCTGCTCCTGTATATGAAGGGCCATTGCCACCTATCTCTGGAGTCTCGTACGCATCTCCTCCACCACCACCTTTCTATTGA 2319 0.5304 MKKEAYSNLSLLIALFLGTLSLSLCAPNQGNGELTDTEAMYIRQRQLLYYRDEFGDRGENVTIDPSLVFENDRIRNAYIALQAWKQAILSDPQNLTANWVGSNVCNYSGVYCAPALDNPRIRTVAGIDLNHGDIAGYLPEELGLLQDLALFHINSNRFCGTLPHRFDRLKLLFELDLSNNRLAGKFPEVVLRLPTLKFLDLRFNEFEGSVPKELFDKDLDAIFINDNRFVFDIPDNIGNSPVSVIVLANNRFRGCIPASLGNMSNLNEIILMNNALRSCLPSEIGLLKNLTVFDVSFNQLLGPLPYTIGGMVSLEQLDVAHNFLSGKIPASICMLPNLKNFTYSYNFFTGEPPACLSLPAFDDRKNCLPARPLQRSPAQCKSFLSKPVDCNSFGCKPFVPSPPGVVVPSPSPPIVVPSPTPSPPGVVPSPSPPTMVPSPSPPGVEPSPSPPSGVPSPSPPIMVPSPTPSPPGAVPSPTPPSWVPSPSPPSGVPSPSPPSGVPSSPPPVSSPPVYSPPSPPPPVYTPPSSPPMYFPPPVYSPPSPPLSPSPLPSPPSSPTPTPPSGNWSPPPPPSSPSPPGPIFSSPPTSPYHSSPPPPTHSPSPPPNSPQPPVYPYLSPPPPPPFHSPPPCEEHSPPPPPPPSPAPYLPSPSPYPPTPPVYVSPPPPVQYSSPPPPPPPPPPPVHYSSPPPPPPPVHYSSPPPPPPVHYSSPPPPVYHSPPPASPPPCETPPSASPPPPVVYGNPPPAPVYEGPLPPISGVSYASPPPPPFY 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00003 772 MobiDBLite consensus disorder prediction 418 772 - -
Gabi4436g00003 772 Gene3D Ribonuclease Inhibitor 239 372 IPR032675 -
Gabi4436g00003 772 FunFam Leucine-rich repeat extensin-like protein 5 240 379 - -
Gabi4436g00003 772 Pfam Leucine rich repeat N-terminal domain 80 112 IPR013210 -
Gabi4436g00003 772 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 23 656 - -
Gabi4436g00003 772 FunFam Leucine-rich repeat extensin-like protein 1 78 239 - -
Gabi4436g00003 772 Pfam Leucine Rich Repeat 313 333 IPR001611 GO:0005515
Gabi4436g00003 772 PRINTS Proline rich extensin signature 426 442 - -
Gabi4436g00003 772 PRINTS Proline rich extensin signature 447 464 - -
Gabi4436g00003 772 PRINTS Proline rich extensin signature 403 424 - -
Gabi4436g00003 772 PRINTS Proline rich extensin signature 468 493 - -
Gabi4436g00003 772 SUPERFAMILY L domain-like 78 360 - -
Gabi4436g00003 772 Gene3D Ribonuclease Inhibitor 78 238 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00003 Gabi-Chr4436 36220 38601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00003 1 395 Trihelix Transcription Factor Family AT4G18670 73.990 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00003 - - qsa:O6P43_007947 676.781