Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4435g00001 ATGGAACAGAAAGGAAATGTTCTTATGCAAAGATATGAACTAGGGAGATTACTAGGCCAAGGAACCTTTGCAAAGGTATATCATGCAAGGAACATTATAACTGGCATGAGTGTGGCCATTAAAGTTGTTGACAAAGAGAAGGTTTTGAAAGTTGGGATGATTGATCAGATTAAGCGTGAAATTTCAGTGATGAGACTAATCAGGCATCCACATGTGGTTGAGCTTTATGAGGTAATGGCCAGCAAAACCAAAATATACTTTGTCATGGAGTATGTAAAAGGTGGTGAGCTCTTCGCCAAGGTATCCAAAGGAAAGCTCAAGCAAGACGATGCTAGGAGATATTTTCAGCAATTGATCAGTGCTGTTGACTACTGCCATAGCAGAGGTGTATGTCACCGCGATTTAAAACCAGAAAATCTTCTATTGGATGAAAATGGAAATTTGAAGGTCTCAGATTTTGGGTTAAGTGCTCTTGCTGAGTCTAAGCACCAAGACGGATTGCTCCATACTACATGTGGTACCCCAGCCTATGTTGCTCCAGAAGTGATCAACAGAAAGGGTTATGATGGGACCAAAGCTGATATATGGTCATGTGGGGTGATCTTGTATGTTCTATTGGCAGGTTTTCTTCCTTTTAGAGATTCAAATCTGATGGAGATGTATAGGAAGATTGGTAAGGCAGAATTCAAATGTCCTAACTGGTTTGCACCAGAAGTACGCAGGTTATTGTCCAAAATCTTGGATCCAAACCCAAAGACCAGGATATCATTGGCAAAAATTATGGAAAATTCTTGGTTCAGAAAGGGGCTTGAGAATCCAACTGTTACTGACAACAAAGACAAAGAACTAGCTCCTCTGGATGCTGATGGAGTTTTTGGAGCTTGTGAGAATGGGGGTCCTGCTGAAGAGTCAAAGCATGAACTATCAAAACCTTGTAATTTAAATGCTTTTGATATCATATCCTTTTCATCAGGTTTTGACTTGTCCGGTTTGTTTGAGGAGACTGATCAAAAGAAAGAAGTGCGGTTCACATCTAACAAGCCTGCCTCAATTATCATATCCAAGTTAGAAGAGATCTGTAAGCGGCTTCGGCTTAAAGTGAAGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAGGTTCCAAGGGAGGAAGGAAAGGGCCTTTGGGTATTGATGCAGAGATTTTTGAGATCACCCCGGTTTTCCATTTGGTGGAGTTAAAAAAGTCCAGTGGAGATACATTGGAGTACCAAAAGCTTTTGAAACAAGATGTTAGGCCTGCACTTAAGGACATTGTTTGGACCTGGCAAGGAGAACAACCACAACAATTGCAACATGGAGTAGTACAGAAAGAGGAACAGCCTTCTCATTCTGGCATATCAGAGCTTGTATCACAACCAACTTTGTAA 1407 0.4094 MEQKGNVLMQRYELGRLLGQGTFAKVYHARNIITGMSVAIKVVDKEKVLKVGMIDQIKREISVMRLIRHPHVVELYEVMASKTKIYFVMEYVKGGELFAKVSKGKLKQDDARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENGNLKVSDFGLSALAESKHQDGLLHTTCGTPAYVAPEVINRKGYDGTKADIWSCGVILYVLLAGFLPFRDSNLMEMYRKIGKAEFKCPNWFAPEVRRLLSKILDPNPKTRISLAKIMENSWFRKGLENPTVTDNKDKELAPLDADGVFGACENGGPAEESKHELSKPCNLNAFDIISFSSGFDLSGLFEETDQKKEVRFTSNKPASIIISKLEEICKRLRLKVKKKDGGLFKLEGSKGGRKGPLGIDAEIFEITPVFHLVELKKSSGDTLEYQKLLKQDVRPALKDIVWTWQGEQPQQLQHGVVQKEEQPSHSGISELVSQPTL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4435g00001 468 Gene3D Kinase associated domain 1, KA1 316 434 - -
Gabi4435g00001 468 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Gabi4435g00001 468 FunFam Non-specific serine/threonine protein kinase 2 288 - -
Gabi4435g00001 468 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Gabi4435g00001 468 CDD STKc_SnRK3 11 265 - -
Gabi4435g00001 468 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 429 - -
Gabi4435g00001 468 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4435g00001 468 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4435g00001 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gabi4435g00001 468 FunFam Non-specific serine/threonine protein kinase 309 433 - -
Gabi4435g00001 468 Pfam NAF domain 311 369 IPR004041 GO:0007165
Gabi4435g00001 468 CDD CIPK_C 315 429 - -
Gabi4435g00001 468 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4435g00001 468 Gene3D Transferase(Phosphotransferase) domain 1 3 315 - -
Gabi4435g00001 468 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Gabi4435g00001 468 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4435g00001 Gabi-Chr4435 10505 13958 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4435g00001 1 441 CBL-interacting serine-threonine protein kinases AT5G58380 68.132 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi4435g00001 Pkinase 5.2e-76 CL0016