Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4433g00006 ATGGAGACCGTCACCTCCGTTCTGAAGCAATACTTTGGGTTTTCGGATTTTCGACCTTATCAGAAAGATGTTGTTCAGAAAATTATTGAGAAAAGGGATTGCGTGGTAGTCATGGCTACCGGTAGTGGAAAGTCCTTGTGTTATCAGTTACCTCCCTTGGTTGTTAGAAAAACTGGGATAGTTGTAAGCCCTCTGATATCATTGATGCAAGACCAGGTAATGGCTTTGAAGCAACGCGGTATCAAAGCTGAATATCTTTCTAGCGCTCAGAAGGATTACACTGTTCAGACTAAAGCTGAGCTTGGTCAGTTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAATTCCTATCAGTTTCTGGTCCAACTTGCTAAGGGCAGGAATTAGTCTTTTAGCTGTTGATGAAGCACATTGCATATCAGAATGGGGGCATGATTTTAGGGTGGAATACAAGCAGCTAGACAAGTTACGTAGTGTTCTGTTAGATGTTCCTTTTGTTGGTCTAACTGCGACTGCTACTGAAAAGGTTCGATTTGACATCATCAATTCCTTGAAGATGAATAATCCTTATGTTTTGGTTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAGCTATTTAACCGTGGACAATTTTTTATTGCTGAGCTTGTACGAGAAATTTCAAAAGAAGTTGCTAGTGGTGGTTCAACTATTATTTACTGCACAACAATCAAAGATGTAGAGCAGATATCAAAGTCACTTAAGGAAGCAGGTATCGAGGCTGGAATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAATCATGGTGGCCACAATTGCTTTTGGCATGGGCATAGATAAACCTAACGTAAGACAAGTGATTCACTATGGTTGCCCCAAGAGTCTAGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTAGAGATGGTATAGCTTCTGTATGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGTGAATTTTATTGTGCAGATATAAAAACAGAAAACCAAAGAAGAGCTGTTATGGAGTCGTTGCTGGCTGCTGAACGCTATTGTGTGGTGGGAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAATTTTCAGCTGATAGATGTGGGAACTGTGATAACTGCACAGTCTCAAAGAAGGAGCGCGACATGTCGAGAGAAGCATTCCTGCTAATGGCTTGCATTCATTCATGCAATGGCAAATGGGGCCTTAATATGCCCGTTGACATCCTGCGTGGGTCTCGAGCCAAGAAAATTCTCGATGCTCAGTTTGACAAGCTTCCACTTCATGGACTTGGGAAAACTTACCCAGCAAATTGGTGGAAAGCCCTTGGACATCAATTGATTTCTCAAGGTTATTTGAAGGAGACTATTAGTGACGTGTACAGAACTATAAGTGTCAGTTCAAAAGGAGAGCAGTTTTTGGCCTCTTCTAGACCGGATTATCAACCTCCCTTAGTTTTGTCATTGACTGCTGAAATGCTTGGAGAAGAAGAAAATCGAAGCCCACAAGAAGAATTCAAAATTTTAGGAACTTCAGAATCAGATGGTTTTTCAGAGGCCGAGGGACAGCTCTACCATATGCTTTTAGAAGAAAGGTTAAAGCTTGCTAGAAGTGTTGGAACAGCTCCATATGCTCTATGTGGTGATCAAACGATCAGGAAAATTGCTTTAACAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGCGTGAATCAGCACCTAGTAACAAAATATGGAGATCGTTTTCTTGAAGTTATACGGAAACTGTCACAAGGATTAAACCTATCATTGGATGGGGAAGCAAGTTTGCAAACTAATGAAGTAAGGAAAGTATCTCCAGTAACCAACAAATCAAGGAAGTTGTCATCAGCAAAGTTTGAAGCATGGAAAATGTGGCATGAAGATGGTCTTTCTATTCAGATGATTGCTAACTATCCAGGTAGATCAGCCCCTATAAAAGAACAAACTGTTGCTGAATATCTGCTGGAAGCTGCCCAAGAAGGATTACCTTTTGATTGGACTAGATTCTTTGAGATGATAGGACTGACACAAGAGATCATATCAGAAATTCAGGGTGCTATTTCAAAGGTTGGATCTACAGATAAGTTGAAGCCTATAAAAAATGAATTGCCAGAACATATAAGTTATCCGCACATCAAGGCTTATTTGGTCATGCGAAACTGTGGAACATCCATAGAAGGCATTCAATCTGGAGTTTACCAGACTGGCAAAGATAGTGAACCTGTAAATAATGCATCAGCTTTGTCAGAGCATCCTTTGGAAAAATGCCAAGCAGAACAACGGCATTGTGAAGCTGACATTCCTGCCAAAAATTTGACGGAAAAATGTGACTTAGAAATTGATGAAGTACCTTCTGGACCTGTCAATGGTCTCCAGGTACAGAAGCTTCCATTAGCCTGTGAGAAGGAATTCACAAGCAAACGACAAAAAGTCAGTGAAACAGAGGAAGTAAATTCAATTGCACTGAAGGCTACAGAGAGTTCTGTTGTAGAGTGGCTGAATGGCGTTGATGAAGGGGCTACTTTGATTGATATTTTGGAGCACTTCAATGGATCCAATGAAGATTATGTGGTTGAACTGCTAAATTGCCTTGAGAGTGACTTTTCGATATATAAGAAAGATAACAAGTATAGGGTTATGTAA 2745 0.4062 METVTSVLKQYFGFSDFRPYQKDVVQKIIEKRDCVVVMATGSGKSLCYQLPPLVVRKTGIVVSPLISLMQDQVMALKQRGIKAEYLSSAQKDYTVQTKAELGQFDILFMTPEKACTIPISFWSNLLRAGISLLAVDEAHCISEWGHDFRVEYKQLDKLRSVLLDVPFVGLTATATEKVRFDIINSLKMNNPYVLVGSFDRTNLFYGVKLFNRGQFFIAELVREISKEVASGGSTIIYCTTIKDVEQISKSLKEAGIEAGMYHGQMNGKAREESHRLFVRDELQIMVATIAFGMGIDKPNVRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGEFYCADIKTENQRRAVMESLLAAERYCVVGTCRRKFLLEYFGEKFSADRCGNCDNCTVSKKERDMSREAFLLMACIHSCNGKWGLNMPVDILRGSRAKKILDAQFDKLPLHGLGKTYPANWWKALGHQLISQGYLKETISDVYRTISVSSKGEQFLASSRPDYQPPLVLSLTAEMLGEEENRSPQEEFKILGTSESDGFSEAEGQLYHMLLEERLKLARSVGTAPYALCGDQTIRKIALTRPSTKARLANIDGVNQHLVTKYGDRFLEVIRKLSQGLNLSLDGEASLQTNEVRKVSPVTNKSRKLSSAKFEAWKMWHEDGLSIQMIANYPGRSAPIKEQTVAEYLLEAAQEGLPFDWTRFFEMIGLTQEIISEIQGAISKVGSTDKLKPIKNELPEHISYPHIKAYLVMRNCGTSIEGIQSGVYQTGKDSEPVNNASALSEHPLEKCQAEQRHCEADIPAKNLTEKCDLEIDEVPSGPVNGLQVQKLPLACEKEFTSKRQKVSETEEVNSIALKATESSVVEWLNGVDEGATLIDILEHFNGSNEDYVVELLNCLESDFSIYKKDNKYRVM 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4433g00006 914 FunFam ATP-dependent DNA helicase 200 401 - -
Gabi4433g00006 914 Gene3D HRDC domain 541 619 IPR044876 -
Gabi4433g00006 914 ProSiteProfiles HRDC domain profile. 543 623 IPR002121 GO:0003676
Gabi4433g00006 914 Pfam RQC domain 404 501 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gabi4433g00006 914 CDD SF2_C_RecQ 200 335 - -
Gabi4433g00006 914 CDD DEXHc_RecQ 6 199 - -
Gabi4433g00006 914 SMART hrdc7 543 623 IPR002121 GO:0003676
Gabi4433g00006 914 Pfam Helicase conserved C-terminal domain 220 325 IPR001650 -
Gabi4433g00006 914 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 370 IPR001650 -
Gabi4433g00006 914 FunFam ATP-dependent DNA helicase 402 526 - -
Gabi4433g00006 914 SUPERFAMILY "Winged helix" DNA-binding domain 398 504 IPR036390 -
Gabi4433g00006 914 Pfam RecQ zinc-binding 339 400 IPR032284 -
Gabi4433g00006 914 SUPERFAMILY HRDC-like 542 618 IPR010997 GO:0000166|GO:0044237
Gabi4433g00006 914 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gabi4433g00006 914 SMART helicmild6 245 326 IPR001650 -
Gabi4433g00006 914 Gene3D - 402 526 IPR036388 -
Gabi4433g00006 914 FunFam ATP-dependent DNA helicase 539 629 - -
Gabi4433g00006 914 Gene3D - 1 198 IPR027417 -
Gabi4433g00006 914 Pfam HRDC domain 548 613 IPR002121 GO:0003676
Gabi4433g00006 914 Gene3D - 200 401 IPR027417 -
Gabi4433g00006 914 NCBIfam RecQ family ATP-dependent DNA helicase 6 458 IPR004589 GO:0004386|GO:0006310
Gabi4433g00006 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 340 IPR027417 -
Gabi4433g00006 914 FunFam ATP-dependent DNA helicase 1 198 - -
Gabi4433g00006 914 Pfam Helix-turn-helix domain 654 750 IPR029491 -
Gabi4433g00006 914 SMART ultradead3 13 210 IPR014001 -
Gabi4433g00006 914 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Gabi4433g00006 914 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 680 - -
Gabi4433g00006 914 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4433g00006 Gabi-Chr4433 35818 46865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4433g00006 12 342 Eukaryotic Initiation Factors Gene Family AT3G19760 23.876 4.72e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4433g00006 K03654 - gmx:100797777 1548.49