Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4432g00001 ATGGGTCGTGGAAAGATTGAGATCAAAAGGATCGAGAATATCAACAGCAGGCAAGTCACATTCTCCAAGAGGAGAAGTGGGTTGCTCAAGAAGGCTAAGGAACTTTCCATTCTATGTGATGCTGAGGTTGCTGTCATTGTCTTCTCCAACACTGGGAAGTTGTTCGAGTTTTCCAGTAATGGTATGAAGCGAACAGTTTCAAGATACAACAAATGCCTTGATTCTCCAGAGGCTGCTGCAGTGGAATATAAGACAAGGAAGGAAGATTCTAAGAAGGTGGAGGTTCTAAGAGATGAAATTGCAGAGCTAGAAACAAAGCAATTACGTTTGTTGGGTGAGGACCTGACAGGATTGGGCTTAAAGGAATTGCAAAATTTAGAGAAGCAACTTAAAGAAGGGTTATTGTCTGTCAAGGAGAAAAAGGAGGAATTACTCTTGGAGCAACTGGAGCAGTCTAGAGTACAGGAACAAAGGGCTATGTTGGAGAATGAAACTTTGCGAAGACAGATTCTGGAGCTTCGTTGCCTGTTTCCGCTAACAGAACATGTGGTCCCATCTTATCTTCAATGTAACCATATGGAAAGAAAAAATACTTTTGTAAATACTAGTGCGACATGTCCCAGCTTGGCCAGTAACTCTGGAAATGAGAAAGGAGGTTCAGACACAACATTGCATTTGGGGTATAGTCCTTCTTCTCTTGTCGTTTCTATTCTTGTTTCTGGTTGTCTTATACTCCTTTTTTCTGCTGTATCGATGGTTGGGTTTACAGAACCTATCCCTGGTCTCGTACTTCCTGAACCGGAAGTAGAAATTAAGGAAGAGGAGTTTGATGAAGCCTTTGAGGCACTGGGGGATAGTGCAGTGGGGCCAACAATGCGAGAGTATCTGGCTAATGTTGTTAATGTACCGTTTGGTTCTATGAGCCCACTATGTACCCTTTGA 942 0.4268 MGRGKIEIKRIENINSRQVTFSKRRSGLLKKAKELSILCDAEVAVIVFSNTGKLFEFSSNGMKRTVSRYNKCLDSPEAAAVEYKTRKEDSKKVEVLRDEIAELETKQLRLLGEDLTGLGLKELQNLEKQLKEGLLSVKEKKEELLLEQLEQSRVQEQRAMLENETLRRQILELRCLFPLTEHVVPSYLQCNHMERKNTFVNTSATCPSLASNSGNEKGGSDTTLHLGYSPSSLVVSILVSGCLILLFSAVSMVGFTEPIPGLVLPEPEVEIKEEEFDEAFEALGDSAVGPTMREYLANVVNVPFGSMSPLCTL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4432g00001 313 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4432g00001 313 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4432g00001 313 Coils Coil 149 169 - -
Gabi4432g00001 313 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi4432g00001 313 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Gabi4432g00001 313 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi4432g00001 313 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 159 - -
Gabi4432g00001 313 Coils Coil 120 143 - -
Gabi4432g00001 313 Coils Coil 86 113 - -
Gabi4432g00001 313 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Gabi4432g00001 313 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi4432g00001 313 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Gabi4432g00001 313 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi4432g00001 313 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi4432g00001 313 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi4432g00001 313 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Gabi4432g00001 313 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4432g00001 Gabi-Chr4432 1623 34394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4432g00001 1 227 MADS-box Gene Family AT5G13790 56.828 6.41e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi4432g00001 K-box 8.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4432g00001 - - gmx:547732 300.827