Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4430g00006 ATGGGGAACAATAGCATATTTCGTTATGCTGATGGAGTGGACAAGTTGTTGATGTTCTTTGGGACTCTGGGTAGCCTTGGAGATGGGTTGCAGAACCCTCTTATGATGTACATTCTTAGTGATGTGATCAATGCCTATGGAGACAAGAATAGTTCTTTGACACAGCATAGTGTGAACAAGTTTGCATTGAGGCTTTTATATGTTGCAATTGGAGTTGGAGTTTCTGCTTTTATTACTTTTCTTGCTTTATGTCAATGGACACTGGCTACTACAGAAGGAATATGTTGGACAAGAACAGCCGAGAGACAAGCTTCCAGAATGAGAATGGAATACCTAAAATCAGTTCTAAGACAAGAAGTTGGTTTCTTTGACACACAGACTGATGGTTCTTCAACAACCTACAAAGTTGTCACACTCATCTCCTCGGATGCAAATGCAATACAAGTTGCCTTGGCTGAGAAGATACCTGACAGCCTGGCTTACATGTCAACATTCTTATTCTGCCACATCTTTGCATTTGTACTATCATGGAGGCTTGCATTGGCAGCCATGCCACTCTCTGTCATGTTCATTCTTCCAGCACTTATATTCGGGAAGATCATGTTGGACCTCGCAATGAAAATGATTGAGTCTTATGGAGTTGCTGGTGGGATTGCAGAACAAGCAATATCTTCAATAAGAACTGTTTATTCTTATGTTGGGGAGAATCAAACACTGAACAGATTTAGCAGTGCACTTCAAAAAACTATGGAATTTGGAATAAAGCAAGGTTTTGCCAAGGGTTTGATGTTAGGAAGTATGGGAGTTATATATATAAGTTGGGGTTTTCAGGCTTGGGTTGGAACTTTTCTGATCACTGAAAAAGGAGAACAAGGTGGCCATGTTTTTGTAGCTGGCTTCAATATCCTCATGGGAGGGCTGAGCATTTTAAGTGCCCTTCCAAATTTAACTGCCATCACTGAAGCAACTGCTGCTGTGACTCGTCTTTTTGAAATGATTGATCGTGTGCCAACTATAGATTCTGAAGAAAAGAAAGGAAAGGCCTTATCATATGTGAGAGGAGAAATTGAATTTCAGGATATCTATTTCTGTTACCCATCTAGGCCAGATACACCAGTGTTGCAGGGATTCAATCTCACAATTCCTGCAGGAAAGAGGATAGGCCTTGTGGGGGGTAGTGGTTCAGGCAAATCAACTGTCATTGCACTTCTTGAGAGGTTTTATGACCCTGTTGAGGGAGAAATACTCTTGGATGGCCACAAGATTAGTAGACTTCAATTGAAATGGTTGAGATCTCAACTTGGCCTTGTAAATCAAGAGGCTGTGCTTTTTGCCACATCCATAAAAGAGAATATATTGTTTGGAAAAGAAGGGGCTTCAATGGAAAGTGTTATAAGTGCAGCTAAAGCAGCAAATGCACATGATTTCATTGTCAAGTTACCAGATGGATATGAAACTCAAGTTGGACAATTTGGATTTCAATTGTCTGGTGGGCAGAAGCAACGCATTGTCATAGCAAGAGCTTTACTAAGGGATCCTAAGGTTCTTCTGCTTGATGAAGCTACCAGTGCACTTGATGCTCAATCTGAAAGAGTGGTACAAGCAGCAATTGATCAAGCTTCAAAAGGAAGAACAACAATCATCATTGCTCACCGCCTTTCAACAATTCGAACAGCTCACATTATTTCAGTCATTCAAGCAGGGACAGTGATTGAATTAGGAACTCATAATGAGCTCATGGAAATGAATGGTGGACAAGGTGGTGAGTATGCTCGTATGGTAGAGATGCAGCAAGTAACAACAACTCAGAATGATGAATCCAAACATACCAATCTTCAAACAGAAGGAAAGAGCACTCAGAAGATGAGCATTCCACAAAGTCCAACTATAAGTTTCAGATCAAGCACACCAGCCACTCCAATGTTAAATCCCTTCAGCCAGGGATTTTCAATGGGGACACCTTACTCCTATTCCATCCAGTATGAACATGATGATGATAGTTATGAAGATAACGTGAAAAGAACAAATTATCCAGCTCCATCACAATGGCGTTTGCTGAAAATGAATGCACCTGAGTGGGGAATAGCAGTGCTTGGAATCTTGGGAGCAATAGGTTCAGGAGCAGTACAACCAGTAAATGCATACTGTGTGGGAACACTTATATCAGTTTATTTTGAAACTGATAGCTCTGAGATGAAATCTAAAGCTAGAGTCCTAGCCCTCATTTTCTTAGGAATTGGTGTTTTTAACTTCTTTACTAGCATTCTCCAACACTATAATTTTGCAATTATGGGAGAAAGGTTGACTAAAAGAATGAGAGAGAAAATACTAGAAAAGTTGATGACTTTTGAGATAGGGTGGTTTGATGATGAAGAGAACACAAGTGCTTCCATTTGTGCAAGATTAGCCTCTGAAGCTAACATGGTTCGGTCCCTTGTTGGGGACAGAATGTCATTGTTGGCACAAGCTATTTTTGGTTCTGTCTTTGCATACACTATAGGACTTGTGCTAACATGGAGGCTTTCCCTTGTGATGATTGCAGTGCAACCATTGGTCATTGGAAGCTTTTACTCAAGAAATGTCTTGATGAAAAGCATGGCAGAAAAAGCTCGCAAAGCACAAAGGGAAGGAAGCCAACTTGCAAGTGAAGCTGTTATAAACCATAGAACCATAACCGCTTTCAGTTCTCAGAAAAGAATGTTGGCACTCTTCAAATCTACAATGGAGGGTCCTAAAAAGGAGAGTGTTAGGCAGTCATGGATTTCAGGTTTTGGTCTTTTCAGCTCACAATTTTTCAACACTGCATCAGCAGCATTGGCTTATTGGTATGGTGGGAAGCTCCTTTTAGATGGGAAGTTAGAACCAAAGCATCTTTTCCAAGCATTTTTAATATTACTCTTCACTGCATACATAATTGCAGATGCTGGAAGCATGACTTCTGACATATCTAAAGGAAGCAGTGCAGTTGGATCAGTTTTTGCTATCTTGGATAGGAAAACTGAGATTGATCCTGAGATATCATGGGGACCAGAGAAAAAGAGGAAAATAAGGGGTAGAGTGGAGCTTAAAAGTGTGTTCTTTGCATATCCAACTAGACCTGACCAAATGGTATTTAAGGGTCTGTTTCTTAAAATTGAAGCTGGGAGAACAGTGGCAATAGTGGGGCATAGTGGTTGTGGTAAATCTACTATTATTGGTCTTATTGAAAGGTTTTATGATCCTGTGAAGGGAACAGTATGCATAGATGAACAAGATATCAAGTCTTATAATTTGAGAATGCTGAGGTCACATATTGCATTGGTGAGTCAGGAACCAACCCTTTTTGCTGGAACCATTCGAGAAAACATTGCTTATGGGAAAGAAAATGCAACTGAGTCTGAGATCAGAAGGGCTGCAGCTCTGGCTAATGCTCATGAATTCATAAGTGGAATGAAAGATGGGTATGAGACATACTGTGGAGAAAGAGGAGTTCAGCTATCAGGAGGTCAAAAACAAAGAGTAGCCTTAGCTCGTGCCATTTTGAAGAATCCTGCAATTCTACTTCTAGATGAGGCTACAAGTGCACTTGATAGTGTGTCAGAAATCTTGGTACAAGAAGCACTTGAGAAGATTATGGTTGGAAGAACATGCATAGTAGTAGCACACAGGCTATCTACAATACAGAAATCCAACTCCATTGCTGTGATTAAGAACGGGAAAGTTGTGGAACAAGGTTCACATAACGAATTGATTTCACTTGGACGTGATGGAGCATACCATTCTCTTGTTAAACTTCAAAATGGTAGCCCCCCTAGGTAA 3798 0.4049 MGNNSIFRYADGVDKLLMFFGTLGSLGDGLQNPLMMYILSDVINAYGDKNSSLTQHSVNKFALRLLYVAIGVGVSAFITFLALCQWTLATTEGICWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTDGSSTTYKVVTLISSDANAIQVALAEKIPDSLAYMSTFLFCHIFAFVLSWRLALAAMPLSVMFILPALIFGKIMLDLAMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLNRFSSALQKTMEFGIKQGFAKGLMLGSMGVIYISWGFQAWVGTFLITEKGEQGGHVFVAGFNILMGGLSILSALPNLTAITEATAAVTRLFEMIDRVPTIDSEEKKGKALSYVRGEIEFQDIYFCYPSRPDTPVLQGFNLTIPAGKRIGLVGGSGSGKSTVIALLERFYDPVEGEILLDGHKISRLQLKWLRSQLGLVNQEAVLFATSIKENILFGKEGASMESVISAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIVIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIRTAHIISVIQAGTVIELGTHNELMEMNGGQGGEYARMVEMQQVTTTQNDESKHTNLQTEGKSTQKMSIPQSPTISFRSSTPATPMLNPFSQGFSMGTPYSYSIQYEHDDDSYEDNVKRTNYPAPSQWRLLKMNAPEWGIAVLGILGAIGSGAVQPVNAYCVGTLISVYFETDSSEMKSKARVLALIFLGIGVFNFFTSILQHYNFAIMGERLTKRMREKILEKLMTFEIGWFDDEENTSASICARLASEANMVRSLVGDRMSLLAQAIFGSVFAYTIGLVLTWRLSLVMIAVQPLVIGSFYSRNVLMKSMAEKARKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTMEGPKKESVRQSWISGFGLFSSQFFNTASAALAYWYGGKLLLDGKLEPKHLFQAFLILLFTAYIIADAGSMTSDISKGSSAVGSVFAILDRKTEIDPEISWGPEKKRKIRGRVELKSVFFAYPTRPDQMVFKGLFLKIEAGRTVAIVGHSGCGKSTIIGLIERFYDPVKGTVCIDEQDIKSYNLRMLRSHIALVSQEPTLFAGTIRENIAYGKENATESEIRRAAALANAHEFISGMKDGYETYCGERGVQLSGGQKQRVALARAILKNPAILLLDEATSALDSVSEILVQEALEKIMVGRTCIVVAHRLSTIQKSNSIAVIKNGKVVEQGSHNELISLGRDGAYHSLVKLQNGSPPR 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4430g00006 1265 Gene3D - 1010 1262 IPR027417 -
Gabi4430g00006 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1020 1256 IPR003439 GO:0005524
Gabi4430g00006 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4430g00006 1265 ProSitePatterns ABC transporters family signature. 495 509 IPR017871 GO:0005524|GO:0016887
Gabi4430g00006 1265 SMART AAA_5 1047 1239 IPR003593 GO:0016887
Gabi4430g00006 1265 SMART AAA_5 383 575 IPR003593 GO:0016887
Gabi4430g00006 1265 SUPERFAMILY ABC transporter transmembrane region 683 1003 IPR036640 GO:0005524|GO:0016020
Gabi4430g00006 1265 Pfam ABC transporter 1040 1187 IPR003439 GO:0005524
Gabi4430g00006 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1014 1259 IPR027417 -
Gabi4430g00006 1265 Gene3D - 346 598 IPR027417 -
Gabi4430g00006 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 697 984 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4430g00006 1265 MobiDBLite consensus disorder prediction 601 638 - -
Gabi4430g00006 1265 SUPERFAMILY ABC transporter transmembrane region 6 340 IPR036640 GO:0005524|GO:0016020
Gabi4430g00006 1265 CDD ABC_MTABC3_MDL1_MDL2 1020 1259 - -
Gabi4430g00006 1265 Gene3D ABC transporter type 1, transmembrane domain 653 1007 IPR036640 GO:0005524|GO:0016020
Gabi4430g00006 1265 FunFam ABC transporter B family member 15-like 6 353 - -
Gabi4430g00006 1265 FunFam Putative ABC transporter B family member 8 661 1007 - -
Gabi4430g00006 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 597 IPR027417 -
Gabi4430g00006 1265 FunFam ABC transporter B family member 4 346 606 - -
Gabi4430g00006 1265 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 329 - -
Gabi4430g00006 1265 Gene3D ABC transporter type 1, transmembrane domain 5 623 IPR036640 GO:0005524|GO:0016020
Gabi4430g00006 1265 FunFam ABC transporter B family member 4 1010 1263 - -
Gabi4430g00006 1265 CDD ABC_MTABC3_MDL1_MDL2 356 597 - -
Gabi4430g00006 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 356 592 IPR003439 GO:0005524
Gabi4430g00006 1265 CDD ABC_6TM_Pgp_ABCB1_D2_like 686 1002 - -
Gabi4430g00006 1265 ProSitePatterns ABC transporters family signature. 1159 1173 IPR017871 GO:0005524|GO:0016887
Gabi4430g00006 1265 Pfam ABC transporter transmembrane region 18 306 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4430g00006 1265 Pfam ABC transporter transmembrane region 698 969 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4430g00006 1265 PANTHER ABC TRANSPORTER B FAMILY 5 754 IPR039421 -
Gabi4430g00006 1265 Pfam ABC transporter 374 523 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4430g00006 Gabi-Chr4430 42394 49799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4430g00006 698 1262 Calmodulin-binding Proteins AT2G36910 38.743 5.59e-110 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4430g00006 K05658 - gmx:100788127 2210.65