Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4426g00002 ATGGCTGTTGAGAATCAAAGGGGTCATTTGGTGGATGAAGATGGGGCACGTGACCCCTTTCCTGCGGGTATGCGTGTTCTTGCTGTGGACGACGACCCAATTTGTCTCAAAGTGTTGGAGACCCTGCTTCGCAAATGCCAGTATCAAGTTACTACATCTAATCAGGCAATCGAGGCCCTTAAAATGTTGAGGGAAAAGAAAAATAAGTTTGACCTTGTTATTAGTGATGTGAATATGCCAGACATGGATGGATTTAAACTCCTAGAGTTGGTGGGACTTGAAATGGATTTGCCCGTTATCATGTTGTCAGCACACAGTGATACAAAGCTGGTGATGAAGGGTGTTACGCATGGTGCATGTGATTATTTGCTTAAACCAGTTCGAATTGAGGAGCTCAAGAACATATGGCAACATGTAGTCCGAAGAAAGAATTTTGATGGCAGGGATCAGAATAAGGCCTCCAACGAGGAGAAGGCTCCTAATATTGCTGGGGAAGGAAGTCAAGGCATCATATCAGAAAACAGTGCTGACCAGAATAAAAAGCTTGGCAAAAAACGGAAGGACGCAAGTGAGGAAGAAGAAGAAGAAGAAGAAGACGGTGAAGGGAATGGAGAAGATGACGACCCCTCAACACAGAAGAAACCTCGCGTAGTTTGGTCTGTAGAGCTGCACAGAAAATTTGTTGCTGCAGTTAATCAACTGGGCCTAGAAAAGGCTGTTCCTAAGAAAATACTTGACATGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCAAGCCATTTGCAGAAATATAGACTCTATCTAAAAAAGGCAACTCAGCAAGCTAGCATGGTTGCTGCATTGGGTAGTAGTGATTCTTTCCTGCGGATGGGTGCTTTAGATGGATATGGAGATTTTTGCACTTCATCTGGATCTGGAAGGATCTCAAGTACCACATTACCATCATATGCATCTAGTGGAATTTTTGGTAGGCTGAATTCCCCGGCTGGCTTGAGCTTGAGAGGAATAGGTAACTCTGCACTAATCCGTCCTGTTCAGTCTCAAAACATTAACAGCTCCTTAAGCACACTTGGAAACATTCAGCCATCCAGGTTTCCTGCAAATCAAAGCTCAAGTTTATTACAGGGCATTCCAGCATCGATTGAGCTTAACCAATCTAAGCAAAACAACTTTGCAACGGGTATATCGCAGTTAAATCAAGTTGATTCAAGTGGATTTACCGTTGCTTCTGGCTTCCCAGACAATGGGACTCCTATTAGTGGTGCAAACAATTCTGTACCTTGTGTCTCAAATAACCATTTATTGTTACCTGGAAATTCACAACAAACACATAATACAGGAGCATTTAGAAATCAGTCTTCTGTTAGAGCAGCTTCTCTGGGTGCAGAATCTTTTGACATCGGCATCTGCGGTCCTAATTTGTTGGATTATAATCGGTGTAATGAAAACTGGCAGAGTGCAGCTCAGTTGTCTAAATTTTCTACCAATTCTTTGCCGTTGTGTGATGCATTCAATAATGACCAACTGCCTCCCCCTAGCATAAATGTTTCGAACTCAAGTACTCGCATCGGTAACAGTCCGGTTGATTTTTCTTCCAGAATTTCAATTCACATTCCTTTGGAGGATGATAAAAATGGGCTGCAATGCCAGCAAGGCTTAATTGGGAATGTTGTACAGCCTTCAAGTTACACACCACGACAAAGGTGGGAAGAACATAAACTGGATTACAACCAAAACATGTGTCATCCATTCAATCCTCTAAATGCACAGGCTTCTTCCACTGGTGGGACAAGTTCTTTAGGGAATAACTTACACCAAAATAATATAATTTGCAGCAATGGAGTTGATGCATCTTTGGTTGGCCAACTGAATGGGGCTTCCCCATCAATCAACCAGTGCGCTGTAGTTGGGAAATTCCCTTCTGACATACGACTGAAGTCAAATGATGCCTACATTTTGGAGCAAATCAAGTCCCAAGATGGATCTGTTGAGAATAATTTCTGGACCTTGGATGACATAATGGGTACCATGGTCAAAAGGGAGCAAAATGACTCAACATTGATGGATGGAGAAATGGGATTTGATGCTTACCCTGTTGGATCATGTATCTGA 2115 0.4255 MAVENQRGHLVDEDGARDPFPAGMRVLAVDDDPICLKVLETLLRKCQYQVTTSNQAIEALKMLREKKNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTKLVMKGVTHGACDYLLKPVRIEELKNIWQHVVRRKNFDGRDQNKASNEEKAPNIAGEGSQGIISENSADQNKKLGKKRKDASEEEEEEEEDGEGNGEDDDPSTQKKPRVVWSVELHRKFVAAVNQLGLEKAVPKKILDMMNVEGLTRENVASHLQKYRLYLKKATQQASMVAALGSSDSFLRMGALDGYGDFCTSSGSGRISSTTLPSYASSGIFGRLNSPAGLSLRGIGNSALIRPVQSQNINSSLSTLGNIQPSRFPANQSSSLLQGIPASIELNQSKQNNFATGISQLNQVDSSGFTVASGFPDNGTPISGANNSVPCVSNNHLLLPGNSQQTHNTGAFRNQSSVRAASLGAESFDIGICGPNLLDYNRCNENWQSAAQLSKFSTNSLPLCDAFNNDQLPPPSINVSNSSTRIGNSPVDFSSRISIHIPLEDDKNGLQCQQGLIGNVVQPSSYTPRQRWEEHKLDYNQNMCHPFNPLNAQASSTGGTSSLGNNLHQNNIICSNGVDASLVGQLNGASPSINQCAVVGKFPSDIRLKSNDAYILEQIKSQDGSVENNFWTLDDIMGTMVKREQNDSTLMDGEMGFDAYPVGSCI 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4426g00002 704 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Gabi4426g00002 704 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 267 IPR006447 GO:0003677
Gabi4426g00002 704 MobiDBLite consensus disorder prediction 147 213 - -
Gabi4426g00002 704 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 270 IPR017930 -
Gabi4426g00002 704 FunFam Two-component response regulator 210 273 - -
Gabi4426g00002 704 Gene3D - 23 160 - -
Gabi4426g00002 704 Coils Coil 179 199 - -
Gabi4426g00002 704 PIRSF RR_ARR_type-B 1 704 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gabi4426g00002 704 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Gabi4426g00002 704 CDD REC_typeB_ARR-like 26 140 - -
Gabi4426g00002 704 Pfam Myb-like DNA-binding domain 216 266 IPR001005 -
Gabi4426g00002 704 SUPERFAMILY Homeodomain-like 211 271 IPR009057 -
Gabi4426g00002 704 Gene3D - 210 272 - -
Gabi4426g00002 704 SMART REC_2 24 136 IPR001789 GO:0000160
Gabi4426g00002 704 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 380 IPR045279 GO:0009736
Gabi4426g00002 704 SUPERFAMILY CheY-like 23 145 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4426g00002 Gabi-Chr4426 35537 41102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4426g00002 16 391 Response Regulator Gene Family AT2G25180 55.906 2.31e-124 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi4426g00002 Response_reg 6.5e-25 CL0304