Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4420g00055 ATGCCGGATATGGATGGATTCAAACTTTTAGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATCATGATGTCAGCTGATGATGGAAAGAATGTTGTAATGAAGGGTGTGAAACATGGTGCTTGTGATTACCTAATTAAGCCCGTGCGTATAGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGAATGAGTGGAAAGATCCGGAACCATCTGGTAGCGTGGAAGAAAGAGATCAGCTGCAAAAGCCATCTGATGATGGAGATTACTCATCCTCAGCAAATGAAGGCAAAACCTCAAAGAAGAGGAGGGATGAGGAAGAGGAATCAGAGGAGAGGGATGATAGTTCCTCGTTGAAGAAGCCGCGGGTTGTTTGGTCTGTTGAGCTCCATCAACAGTTTATGGGTGCTGTGAATCAACTGGGGATTGACAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATATCGTTTGTATCTTCGAAGGCTGAGTGGAGTTTCCCAGCAGCAGAATAGCTTTGGCAACTCCTTCATCAGCCCACAAGAAGCATCATTTGGGGCAACTTCAATCAATGGAATTGATCTTCAAACTTTTTCAGTTGCTGGCCAGATGCCAGCACAAAGTCTTGCCAAGCTTCAAGCAGCAGGACTTGGTAGGTCAACTGCAAAAGCAGGTATGCCTATACATCTAGTTGAGCAAAAGAACCTATTCAGTTTTGAGAACCCAAGATTAAGATTTGGAGAAGGGCAACTGCAACATTTGAGCAGCAGTAAACCAATGAACTTGCTTCATGGAATCCCTACCAATATGGAGCCAAAGCAGCTTGTCAATTTTAACCAACCTACCCAATCCTTTGGCAACTTGAATATGCGAGTCAATGCTCCTGTTGCTCAGAGCAGCCCCTTGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATGTTAAGTGAAAATACTGGTTCACATGTTACCAGGTTTCCATCATCTTTGGTGCAGCCCACAGTACCAAATGGAATTTCTAATGGTGTTCTGGGAAACGGGATTGCTGGTACCAGCAACATAACTCCTGCTTATAATCCAGTTACACAAAGCTCTTCATTGTTGAGTTTTCCCATGAACCGAACCACTGAAATGTCAGCTAGTAATTTCCCTCTTAGAAGCACTCCAGGTACATCCAGTATCACAACAAAAGGCATGTTTCATGGGGAACTTACTTCAGGAATTAAAGAATCTGGTGGATTTGTTCCAAGTTATGATATTTTTAATGAACTCCACCATCAGAAATCCCATGACTGGGACTTAAGAAACAGAGGCCTGACATATGCTTCTCAGAATGCAAATCCTTTACAAGGTAACATTGATGTCTCACCATCAGTTTTAGTCCATCAGGGTTTTTCCTCTATCCAACAGACTGGACAAAATAGAGATGCTACTTCAATTGGAAAGGCTGTGTTCTCCATAGGTGAAGGCATGAATCAAGGTAATCTCCAAAATGTTGGTCAACATCTCAATACGCTTCTTGGTGACAATTCAATGAGGGTTAAGGCTGAAAGAATTCCTGATCCAAGCTCCCAGATTAACCTCTTCCCTGAGCAATATGGGCAGGAGGACCTTATGAGTGTATTTCTGAAACAGCAACAAGGCATTGGATCAGGTGAAAATGAGTTTGACTTTGATGAATATTCCATAGACAACATTCCGGTCTAG 1767 0.4301 MPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVKHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDPEPSGSVEERDQLQKPSDDGDYSSSANEGKTSKKRRDEEEESEERDDSSSLKKPRVVWSVELHQQFMGAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQNSFGNSFISPQEASFGATSINGIDLQTFSVAGQMPAQSLAKLQAAGLGRSTAKAGMPIHLVEQKNLFSFENPRLRFGEGQLQHLSSSKPMNLLHGIPTNMEPKQLVNFNQPTQSFGNLNMRVNAPVAQSSPLLMQMAQSQPRGQMLSENTGSHVTRFPSSLVQPTVPNGISNGVLGNGIAGTSNITPAYNPVTQSSSLLSFPMNRTTEMSASNFPLRSTPGTSSITTKGMFHGELTSGIKESGGFVPSYDIFNELHHQKSHDWDLRNRGLTYASQNANPLQGNIDVSPSVLVHQGFSSIQQTGQNRDATSIGKAVFSIGEGMNQGNLQNVGQHLNTLLGDNSMRVKAERIPDPSSQINLFPEQYGQEDLMSVFLKQQQGIGSGENEFDFDEYSIDNIPV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4420g00055 588 PIRSF RR_ARR_type-B 1 580 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gabi4420g00055 588 ProSiteProfiles Response regulatory domain profile. 1 62 IPR001789 GO:0000160
Gabi4420g00055 588 NCBIfam myb-like DNA-binding domain, SHAQKYF class 124 177 IPR006447 GO:0003677
Gabi4420g00055 588 CDD REC_typeB_ARR-like 1 62 - -
Gabi4420g00055 588 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 180 IPR017930 -
Gabi4420g00055 588 FunFam Two-component response regulator 120 183 - -
Gabi4420g00055 588 SUPERFAMILY Homeodomain-like 122 181 IPR009057 -
Gabi4420g00055 588 MobiDBLite consensus disorder prediction 65 88 - -
Gabi4420g00055 588 MobiDBLite consensus disorder prediction 99 121 - -
Gabi4420g00055 588 Gene3D - 121 183 - -
Gabi4420g00055 588 SUPERFAMILY CheY-like 1 68 IPR011006 -
Gabi4420g00055 588 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 274 IPR045279 GO:0009736
Gabi4420g00055 588 Gene3D - 1 70 - -
Gabi4420g00055 588 MobiDBLite consensus disorder prediction 65 121 - -
Gabi4420g00055 588 Pfam Response regulator receiver domain 1 56 IPR001789 GO:0000160
Gabi4420g00055 588 Pfam Myb-like DNA-binding domain 126 176 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4420g00055 Gabi-Chr4420 646897 650913 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4420g00055 1 588 Response Regulator Gene Family AT3G16857 48.649 1.74e-157 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi4420g00055 Response_reg 3.6e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4420g00055 - K14491 gmx:100809583 943.34