Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4420g00054 ATGAATCTGAGTAACAGCACGGGATCCATGTCAACGCCAAGTTCAAGTTCAGCTCTGAAATCCGGCGACGGAGATGCCTCCGACCAATTTCCGGTGGGTCTCCGGGTACTGGTGGTGGATGATGATCCCACGTGCCTTATGATCCTTGAGAGGATGCTGCGTGCTTGCTTCTACGAAGTTACGAAATGCAACCGAGCAGAGGTTGCATTGTCACTTCTGAGAGAGAACAAAAATGGGTTTGATATTGTTTTAAGCGATGTGCATATGCCGGATATGGATGGATTCAAACTTTTAGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATCATGATGTCAGCTGATGATGGAAAGAATGTTGTAATGAAGGGTGTGAAACATGGTGCTTGTGATTACCTAATTAAGCCCGTGCGTATAGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGAATGAGTGGAAAGATCCGGAACCATCTGGTAGCGTGGAAGAAAGAGATCAGCTGCAAAAGCCATCTGATGATGGAGATTACTCATCCTCAGCAAATGAAGGCAAAACCTCAAAGAAGAGGAGGGATGAGGAAGAGGAATCAGAGGAGAGGGATGATAGTTCCTCGTTGAAGAAGCCGCGGGTTGTTTGGTCTGTTGAGCTCCATCAACAGTTTATGGGTGCTGTGAATCAACTGGGGATTGACAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATATCGTTTGTATCTTCGAAGGCTGAGTGGAGTTTCCCAGCAGCAGAATAGCTTTGGCAACTCCTTCATCAGCCCACAAGAAGCATCATTTGGGGCAACTTCAATCAATGGAATTGATCTTCAAACTTTTTCAGTTGCTGGCCAGATGCCAGCACAAAGTCTTGCCAAGCTTCAAGCAGCAGGACTTGGTAGGTCAACTGCAAAAGCAGGTATGCCTATACATCTAGTTGAGCAAAAGAACCTATTCAGTTTTGAGAACCCAAGATTAAGATTTGGAGAAGGGCAACTGCAACATTTGAGCAGCAGTAAACCAATGAACTTGCTTCATGGAATCCCTACCAATATGGAGCCAAAGCAGCTTGTCAATTTTAACCAACCTACCCAATCCTTTGGCAACTTGAATATGCGAGTCAATGCTCCTGTTGCTCAGAGCAGCCCCTTGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATGTTAAGTGAAAATACTGGTTCACATGTTACCAGGTTTCCATCATCTTTGGTGCAGCCCACAGTACCAAATGGAATTTCTAATGGTGTTCTGGGAAACGGGATTGCTGGTACCAGCAACATAACTCCTGCTTATAATCCAGTTACACAAAGCTCTTCATTGTTGAGTTTTCCCATGAACCGAACCACTGAAATGTCAGCTAGTAATTTCCCTCTTAGAAGCACTCCAGGTACATCCAGTATCACAACAAAAGGCATGTTTCATGGGGAACTTACTTCAGGAATTAAAGAATCTGGTGGATTTGTTCCAAGTTATGATATTTTTAATGAACTCCACCATCAGAAATCCCATGACTGGGACTTAAGAAACAGAGGCCTGACATATGCTTCTCAGAATGCAAATCCTTTACAAGGTAACATTGATGTCTCACCATCAGTTTTAGTCCATCAGGGTTTTTCCTCTATCCAACAGACTGGACAAAATAGAGATGCTACTTCAATTGGAAAGGCTGTGTTCTCCATAGGTGAAGGCATGAATCAAGGTAATCTCCAAAATGTTGGTCAACATCTCAATACGCTTCTTGGTGACAATTCAATGAGGGTTAAGGCTGAAAGAATTCCTGATCCAAGCTCCCAGATTAACCTCTTCCCTGAGCAATATGGGCAGGAGGACCTTATGAGTGTATTTCTGAAACAGCAACAAGGCATTGGATCAGGTGAAAATGAGTTTGACTTTGATGAATATTCCATAGACAACATTCCGGTCTAG 2031 0.4377 MNLSNSTGSMSTPSSSSALKSGDGDASDQFPVGLRVLVVDDDPTCLMILERMLRACFYEVTKCNRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVKHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDPEPSGSVEERDQLQKPSDDGDYSSSANEGKTSKKRRDEEEESEERDDSSSLKKPRVVWSVELHQQFMGAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQNSFGNSFISPQEASFGATSINGIDLQTFSVAGQMPAQSLAKLQAAGLGRSTAKAGMPIHLVEQKNLFSFENPRLRFGEGQLQHLSSSKPMNLLHGIPTNMEPKQLVNFNQPTQSFGNLNMRVNAPVAQSSPLLMQMAQSQPRGQMLSENTGSHVTRFPSSLVQPTVPNGISNGVLGNGIAGTSNITPAYNPVTQSSSLLSFPMNRTTEMSASNFPLRSTPGTSSITTKGMFHGELTSGIKESGGFVPSYDIFNELHHQKSHDWDLRNRGLTYASQNANPLQGNIDVSPSVLVHQGFSSIQQTGQNRDATSIGKAVFSIGEGMNQGNLQNVGQHLNTLLGDNSMRVKAERIPDPSSQINLFPEQYGQEDLMSVFLKQQQGIGSGENEFDFDEYSIDNIPV 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4420g00054 676 MobiDBLite consensus disorder prediction 187 209 - -
Gabi4420g00054 676 SUPERFAMILY Homeodomain-like 210 269 IPR009057 -
Gabi4420g00054 676 CDD REC_typeB_ARR-like 36 150 - -
Gabi4420g00054 676 Gene3D - 209 271 - -
Gabi4420g00054 676 MobiDBLite consensus disorder prediction 153 176 - -
Gabi4420g00054 676 Pfam Response regulator receiver domain 36 144 IPR001789 GO:0000160
Gabi4420g00054 676 FunFam Two-component response regulator 208 271 - -
Gabi4420g00054 676 SMART REC_2 34 146 IPR001789 GO:0000160
Gabi4420g00054 676 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Gabi4420g00054 676 Gene3D - 34 163 - -
Gabi4420g00054 676 MobiDBLite consensus disorder prediction 153 209 - -
Gabi4420g00054 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 34 327 IPR045279 GO:0009736
Gabi4420g00054 676 FunFam Two-component response regulator 34 171 - -
Gabi4420g00054 676 SUPERFAMILY CheY-like 33 156 IPR011006 -
Gabi4420g00054 676 MobiDBLite consensus disorder prediction 1 23 - -
Gabi4420g00054 676 MobiDBLite consensus disorder prediction 1 25 - -
Gabi4420g00054 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 268 IPR017930 -
Gabi4420g00054 676 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Gabi4420g00054 676 PIRSF RR_ARR_type-B 14 668 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gabi4420g00054 676 ProSiteProfiles Response regulatory domain profile. 35 150 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4420g00054 Gabi-Chr4420 646897 651164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4420g00054 68 676 Response Regulator Gene Family AT3G16857 49.538 9.20e-171 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi4420g00054 Response_reg 7.8e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4420g00054 - K14491 gmx:100809583 1068.91