Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4420g00048 ATGTCAGAAGGAAACAATCTGGTTCTGGAATCATCTGAAAATGGAACAGATTTGTCTCAGGATGACATTGGCACCATTGAGGAAACACCAGAGGAAACAATTTTGTCAAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGTCAAAGATTTGTTTCCCAAGAAGCTGCTTATGAATTTTATTGCAGTTTTGCTAGACAATGTGGCTTTTCTATTAGACGACATCGCACTAGAGGCAAAGATGGAGTTGGCCGGGGAGTTACGAGGAGGGATTTTACTTGCCATCGTGGCGGATATCCCCAGATTAAACCTTCTGATGATGGGAAGGTGCAAAGGAACCGCAAATCGTCTCGCTGTGGTTGCCAAGCATACTTGCGTATTGTGAAAAGGGCAGACTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACATCCACAATCATGAGTTGTTAAAATCCAATGAGGTGCGTCTTCTTCCAGCATATTGTCCAATATCCCCTGATGACAAGAGTCGTATATGCATGTTTGCTAAAGCTGGAATGTCAGTTAGGCAAATGTTAAGATTGATGGAGCTAGAGAAAGGCATCAAACTTGGCTGTCTTCCTTTTACAGAGGTTGATGTGAGAAACTTGTTGCAGTCTTTCAGAAACGTGGATAGAGATAATGATGCTATTGATCTGATCGCAATGTGCAAGAGATTAAAAGATGAAAATCATAACTTCAAATATGAATTCAAGATAGATAGTAATAACAGACTTGAGCATATTGCATGGTCCTATGGCTCATCTGTTCAATCATATGAGGCATTTGGAGATGCTGTGGTTTTTGATACAACCTACCGAGTAGATGCTTATGATATGCTATTGGGAATTTGGCTTGGAGTGGACAATAATGGAATGACTTGTTTCTTTACTTGTGCACTTCTACGGGATGAAAATATGCAGTCCTTTTCATGGGCTTTGAAGGCTTTCTTGGGCTTCATGAAAGGAAAGGCTCCGCAAACAATATTAACTGATCACAACATGTGGCTAAAAGATGCTATTGCTGTTGAAATGCCCGAAACTAAACATGCCTTTTGTATATGGCATATTCTTTCTAAGTTCTCTGACTGGTTTTCTTTACTTCTTGGATCACAATATGATCAGTGGAAAGTGGAGTTCCATCGGCTCTACAATTTGGAACTGGTGGAAGATTTTGAACAAGGCTGGAGGCAAATGGTTGATAAATATGGACTCCACGCAAATAAACATATTATTAGCCTATACTCATTAAGGACATTTTGGGCTTTACCATTCTTGAGGCGTTACTTCTTTGCAGGATTGACCAGCACTTGTCAGTCCGAGTCCATTAATGCTTTCATCCAACGGTTCTTGAGTGCCCAATCTCAACTAGAACGCTTTGTAGAGCAAGTGGCTGATATTGTTGATTATAATTACCGGGCCGGAGTTAAGCAAAAGATGCACCGGAAACTGCAGAAAGTGTGCCTCAAAACGGGTTCACCTATAGAATCCCATGCTGCCACTGTGCTTACTCCTTATGCCCTAAGTAAACTCCAGGATGAGCTAGTTTTGGCACCACAGTACGCATCCTTTATGGTTGATGAAGGTTGTTTCCAGGTCAGACACCACTCCCATGCAGAAGGAGGGTACAAAGTAATTTGGATTCCTTGTCAAGAACACATCAGCTGCGGCTGCCATCTGTTTGAGTTTTCCGGCATCTTATGCAGACATGTGCTACGTGTCATGTCAATTAATAACTGTTTTCACATACCTGATCAATATTTACCTGCCAGATGGCGAGGCGTCAGTTTATCTTCTGTTAACCAATTTCGGGTTACAACTAGCAGGGATCAGCCTGAAAGGATACAATTTTTGGAATCCATGGTTTCAACACTTCTAATGGAATCCATTGAAACAGAGGAACGCCTTGATGTTGCTAGTGAGCAAGTTTCCATGGTGCTATCACGTATCAAAACCCTTCCTAGGTCAGCACCTGGGGTAAATGACATTGCATATAGTTATGCATCAGATTCGTTGATCCTGCCAGAGGTAGAAGATACTGATGGAATGATTCATAGTTTTACAATTGCAAGTCCCCATGATTCTATCACTTTAGGAAAGCTGAAGGAGAGAAGGGCAAGAGATGGAGTTGATCTCACTAGGAAGCGTAGGCAGTTCTCAGCCCCATTGTGTGCTCAATATGGACATGATGCATCTGATTGCTCAATAATGGCGGGTGATAATATGAGCGGAGATGCGTTAGGCTATTTGTAG 2277 0.4181 MSEGNNLVLESSENGTDLSQDDIGTIEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFARQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQIKPSDDGKVQRNRKSSRCGCQAYLRIVKRADFDVPEWRVTGFRNIHNHELLKSNEVRLLPAYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEVDVRNLLQSFRNVDRDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEHIAWSYGSSVQSYEAFGDAVVFDTTYRVDAYDMLLGIWLGVDNNGMTCFFTCALLRDENMQSFSWALKAFLGFMKGKAPQTILTDHNMWLKDAIAVEMPETKHAFCIWHILSKFSDWFSLLLGSQYDQWKVEFHRLYNLELVEDFEQGWRQMVDKYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSTCQSESINAFIQRFLSAQSQLERFVEQVADIVDYNYRAGVKQKMHRKLQKVCLKTGSPIESHAATVLTPYALSKLQDELVLAPQYASFMVDEGCFQVRHHSHAEGGYKVIWIPCQEHISCGCHLFEFSGILCRHVLRVMSINNCFHIPDQYLPARWRGVSLSSVNQFRVTTSRDQPERIQFLESMVSTLLMESIETEERLDVASEQVSMVLSRIKTLPRSAPGVNDIAYSYASDSLILPEVEDTDGMIHSFTIASPHDSITLGKLKERRARDGVDLTRKRRQFSAPLCAQYGHDASDCSIMAGDNMSGDALGYL 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4420g00048 758 Pfam MULE transposase domain 275 367 IPR018289 -
Gabi4420g00048 758 ProSiteProfiles Zinc finger SWIM-type profile. 551 587 IPR007527 GO:0008270
Gabi4420g00048 758 MobiDBLite consensus disorder prediction 1 22 - -
Gabi4420g00048 758 Pfam SWIM zinc finger 561 583 IPR007527 GO:0008270
Gabi4420g00048 758 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
Gabi4420g00048 758 SMART 26again6 562 589 IPR006564 GO:0008270
Gabi4420g00048 758 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 606 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4420g00048 Gabi-Chr4420 603662 612030 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi4420g00048 MULE 3.4e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4420g00048 - - gmx:100778434 1425.61