Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4420g00047 ATGAGTGAATCAAAAAACCCTATTCATAAAAATGAGAGGAAAGCTTCCTCTTCCAACTCAACAACGTTGAAGCTATTCGGTTTCCCATTAATACCAGCTAGCTCCGAAGAAGACATGTCAGCGAAGGCCATTCCTTGTGGCAACAAGAAGAAGAGATTCAAATGCCATTTCTGTCGCCGAGAATTTGTCAATTCTCAAGCACTTGGTGGCCATCAAAATGCGCACAAGAGAGAACGCCAAAAAGCCACTCTAGCACATTTCCAACACTTTGTTCCCCTCCTTCCCCATCATCAACGGTTCATAGCAGCTTCCCCTATTCCTACCATGGCTACACGTGGACCAACAAGATCATCAGGACCGTTCATTCATCCACATGGGTCACCAGCTGGTGGTGCAGATCATCATAATCCTTGGTTTCCAAGGGCATGGGACGCATCACAACCTTTGACCTCCGATGTGGAGCCTAATGATCAGGTTTCTTTTGTGAGACCAAATGGTGAAAGCAGGGCCAGAAAAGAGGCTTTCATAGAAGTACATAATCTTGATGGTGATGTTGATGTTGATCTTAACTTGTGTTTAGCTAGCATACCCTCCAATTCCAGGGACAAGAGGTGA 615 0.452 MSESKNPIHKNERKASSSNSTTLKLFGFPLIPASSEEDMSAKAIPCGNKKKRFKCHFCRREFVNSQALGGHQNAHKRERQKATLAHFQHFVPLLPHHQRFIAASPIPTMATRGPTRSSGPFIHPHGSPAGGADHHNPWFPRAWDASQPLTSDVEPNDQVSFVRPNGESRARKEAFIEVHNLDGDVDVDLNLCLASIPSNSRDKR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4420g00047 204 PANTHER ZINC FINGER PROTEIN 5 2 193 IPR044299 GO:0010090
Gabi4420g00047 204 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Gabi4420g00047 204 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Gabi4420g00047 204 SUPERFAMILY beta-beta-alpha zinc fingers 49 80 IPR036236 -
Gabi4420g00047 204 Gene3D Classic Zinc Finger 34 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4420g00047 Gabi-Chr4420 562025 562639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4420g00047 17 80 C2H2 Transcription Factor Family AT1G67030 46.269 1.35e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4420g00047 - - aprc:113852247 150.599