Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4420g00037 ATGATGGCACACAACTTAACTGGGCAGCTTGTGGGTTCAGAGATACATGGGTTCCACACGTTGCAGGAGCTGGATGTTGAGAACACTATGGAGGAAGCAAGAAGCAGGTGGCTTCGTCCCAATGAGATTCATGCCATACTCTCTAATTACAAATATTTCACGATCAATGTCAAGCCAATGAAGCTGCCCAAAAGTGGTACTATTGTACTATTTGATCGCAAGGTGCTTAGGAACTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAATGATGGAAAAACTGTTAAAGAAGCCCATGAACACTTAAAAGTTGGTACTGAAGAAAGGGTCCACGTATATTATGCACATGGCCAAGATAACCCGAGCTTTGTCCGTAGATGTTATTGGTTGCTTGATAAGACTCTGGAGCATATTGTCCTTGTTCATTATCGAGAAACACAGGAGTTGCAAGGTTCTCCTGTCACACCTGTAAATTCGAATTCAAGTTCTGCCTCTAATCAAACCACACCGTGGATTTTATCAGAAGACTTAGATACTGGGACCAATAGTGCTTATGCTGATGGGCTTAATAATTTAACAGTCAAAAGTCATGACCTGAGGCTTCATGAGATTAATACACTTGAATGGGATGAACTAGTGGCTTTAAATGATAACACCTCTACTATACCTAATGGAGGCAATGTTCCATGTTTGGATCAACAAAATCAAAGTTTACTGAATGACAGCTTTGGCAATGTAGCCAGCAATACTTCTGCAGAAATTCCTTCTTTTGATAATTTAACTCAGCCAATTTCTGGGAGCTATAGTGTCCCTTACAGTTCTCCAGAAAGTGTTGGTCTTCAGAGGAATTGTCCTATCTCTTTGGGTGGTGTTGATTCCTTGGACACTTTGGTCAATGAAGGCTTGCAAAGTCAGGACACCTTTGGAATGTGGATAGACAACATCATATCTGACACACCATGTTCTATAGATGAATCAGCTCTCAAACCCTCAATTTCTTCATCTATTCATGAACCTAATTCGTCGTTGGTGATGGATAAACAGCAATCCTCTCTGCCAGAATATGTATTTAATCTCACTGAGGTGTCCCCTGGGTGGGCATCTTCCACTGAGAAAACAAAGGTCCTGATTACTGGATTATTTCATAATGACTATCAACACCTTGCAAAGTCTAATCTACTGTGTGTCTGTGGTGAAGTAAGTGTTCCTGTAGAAATTGTTCAGGTCGGGGTTTACCGATGCTGGGTATCGCCACACTCTCCTGGATTCGTGAATCTCTATATGAGCTTGGATGGCCATAAGCCTATTAGCCAAGTTATAAATTTTGAATATCGTACACCTATTTTGCATGACCCTGCTGCTTCTATGGAAGAGAAATGCAACTGGAATGAGTTTCTACTTCAGATGAGGCTTGCTCATTTGCTCTTTGCCACACAAAAGAGCCTTGATATTTTCTCTAGTAAAGTATCACCTAATGCACTGAAAGAAGCTAGAAAATTTTCCTCCAAAACTTCATTTATTTCCAAAAGTTGGCAATATTTGATGAAGTCAACTAAGGACAATACAACTCCATTTCCGCAAGCAAAAGATGACTTGTTTGAAATTGCATTGAAAAACAAACTGAAGGAATGGCTTTTGGAACGAATTGTCTTAGGCCATAAGACTGCTGAATATGATGCGCAAGGCCAAGGTGTAATTCATTTATGTGCAATTTTGGGATATACTTGGGCTGTTTCCTTATTTTCGTGGTCAGGCTTGTCGCTGAATTTCCGGGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTATGGAAAGGAGAAAATGGTTGCAACTCTGTTGTCTTTTGGGGCAAGGCCAAACTTGGTCACAGATCCAACTCCACAAAATCCTGGGGGATGTACTGCTGCTGATCTTGCTTATATGAAGGGATATGAGGGCTTAGCCGCTTATCTTTCGGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCTCTGGAAACTAACACTGCTGATCCAGTAAATTCTGAGAACCTTACTGAGGACCAGCTGTACCTAAAGGATACGTTGGCAGCATACCGAACAACTGCTGAAGCTGCAGCACGCATACAAGCAGCGTTTAGGGAGCACTCACTAAAATTGCGATATAACACAATTAAAGTTTGTAGTCCTGAGGATGAAGCACGCCAAATAGTAGCTGCAATGAGGATTCAACATGCCTTTCGCAACTTTGAGACAAGGAAAAGGATGACAGCTGCTGCTCGGATCCAGCATAGATTCCGTACCTGGAAGTTCCGTAGAGACTTTCTCCACATGCGCCGTCAGGCTATTAAAATCCAAGCTGCTTTCAGGGGCTTTCAAATGCGGAAACACTATAAGAAAATTATTTGGTCTGTTGGAGTGCTTGAGAAAGCAATCCTGCGTTGGCGTTTAAAGAGAAAAGGGTTCCGCGGGCTGCAGGTTAATCCTGTCCAAGAAATGAAAGATGAGGAGGAAGAGGAAAGTGATGTAGAAGAGGACTTCTTTAGGACTGGTAGGAAACAAGCTGTAGAACGTGTTGAGAGGTCTGTGGTACGTGTACAAGCCATGTTTCGCTCTAAGAAAGCACAAGAAGAGTATAGGAGGATGAAGCTTGCCCATAATCAAGCAAAGCTGGAACTGGAATTTGAAGAATTTCTCAATTCTGAAGTAGACATGTTAACAACAAGGACATAG 2742 0.419 MMAHNLTGQLVGSEIHGFHTLQELDVENTMEEARSRWLRPNEIHAILSNYKYFTINVKPMKLPKSGTIVLFDRKVLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGTEERVHVYYAHGQDNPSFVRRCYWLLDKTLEHIVLVHYRETQELQGSPVTPVNSNSSSASNQTTPWILSEDLDTGTNSAYADGLNNLTVKSHDLRLHEINTLEWDELVALNDNTSTIPNGGNVPCLDQQNQSLLNDSFGNVASNTSAEIPSFDNLTQPISGSYSVPYSSPESVGLQRNCPISLGGVDSLDTLVNEGLQSQDTFGMWIDNIISDTPCSIDESALKPSISSSIHEPNSSLVMDKQQSSLPEYVFNLTEVSPGWASSTEKTKVLITGLFHNDYQHLAKSNLLCVCGEVSVPVEIVQVGVYRCWVSPHSPGFVNLYMSLDGHKPISQVINFEYRTPILHDPAASMEEKCNWNEFLLQMRLAHLLFATQKSLDIFSSKVSPNALKEARKFSSKTSFISKSWQYLMKSTKDNTTPFPQAKDDLFEIALKNKLKEWLLERIVLGHKTAEYDAQGQGVIHLCAILGYTWAVSLFSWSGLSLNFRDKFGWTALHWAAYYGKEKMVATLLSFGARPNLVTDPTPQNPGGCTAADLAYMKGYEGLAAYLSEKSLVEQFNDMSLAGNISGSLETNTADPVNSENLTEDQLYLKDTLAAYRTTAEAAARIQAAFREHSLKLRYNTIKVCSPEDEARQIVAAMRIQHAFRNFETRKRMTAAARIQHRFRTWKFRRDFLHMRRQAIKIQAAFRGFQMRKHYKKIIWSVGVLEKAILRWRLKRKGFRGLQVNPVQEMKDEEEEESDVEEDFFRTGRKQAVERVERSVVRVQAMFRSKKAQEEYRRMKLAHNQAKLELEFEEFLNSEVDMLTTRT 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4420g00037 913 SUPERFAMILY E set domains 358 445 IPR014756 -
Gabi4420g00037 913 ProSiteProfiles Ankyrin repeat region circular profile. 594 622 - -
Gabi4420g00037 913 ProSiteProfiles IQ motif profile. 863 891 IPR000048 GO:0005515
Gabi4420g00037 913 SMART iq_5 861 883 IPR000048 GO:0005515
Gabi4420g00037 913 SMART iq_5 780 802 IPR000048 GO:0005515
Gabi4420g00037 913 SMART iq_5 738 760 IPR000048 GO:0005515
Gabi4420g00037 913 SMART iq_5 704 726 IPR000048 GO:0005515
Gabi4420g00037 913 ProSiteProfiles IQ motif profile. 705 734 IPR000048 GO:0005515
Gabi4420g00037 913 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Gabi4420g00037 913 ProSiteProfiles Ankyrin repeat profile. 594 626 IPR002110 GO:0005515
Gabi4420g00037 913 SUPERFAMILY Ankyrin repeat 534 656 IPR036770 -
Gabi4420g00037 913 FunFam calmodulin-binding transcription activator 5 524 664 - -
Gabi4420g00037 913 Gene3D Immunoglobulins 354 448 IPR013783 -
Gabi4420g00037 913 Gene3D - 705 760 - -
Gabi4420g00037 913 Gene3D - 761 805 - -
Gabi4420g00037 913 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 892 - -
Gabi4420g00037 913 Gene3D - 523 663 IPR036770 -
Gabi4420g00037 913 Coils Coil 875 895 - -
Gabi4420g00037 913 FunFam Calmodulin-binding transcription activator 5 353 449 - -
Gabi4420g00037 913 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Gabi4420g00037 913 ProSiteProfiles IQ motif profile. 781 805 IPR000048 GO:0005515
Gabi4420g00037 913 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Gabi4420g00037 913 ProSiteProfiles IQ motif profile. 739 768 IPR000048 GO:0005515
Gabi4420g00037 913 Pfam Ankyrin repeats (3 copies) 539 623 IPR002110 GO:0005515
Gabi4420g00037 913 SMART ANK_2a 633 664 IPR002110 GO:0005515
Gabi4420g00037 913 SMART ANK_2a 594 623 IPR002110 GO:0005515
Gabi4420g00037 913 SMART CG_1_2 30 147 IPR005559 GO:0003677
Gabi4420g00037 913 Pfam IQ calmodulin-binding motif 783 802 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4420g00037 Gabi-Chr4420 416801 427613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4420g00037 30 895 CAMTA Transcription Factor Family AT3G16940 56.407 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gabi4420g00037 Ank_2 7.4e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4420g00037 K21596 - gmx:100819198 1427.54