Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4420g00008 ATGGAAGACTTATGCCATTTCAGTGAGTTCAGTTTCAGTGGAGTTGAGGACAAATACAGTTCATCAAATGATAGTTTATGGGCTACTGAGGGACTGAATGAAGTGAAAAAGGTTCATTTTTCTGGAGCAGAAGATTGGGGAGAGTCTTCTGGTTTTGGGTTCATTCCAAATGATCCAACTGAAGATGAAGGATACCTTCTATCCACTAAGTATCACCAACAACCATCATATGAGGATTATGGACCATTGGATAACCTACAATTTGACATGGTGTCTCCACCACTCCAACCTTACCTTGGGGAAAACATCCAATTCGATGAACAAAATCCAACCATGGTTCCACTTTGTGACCCAACAAAGGACAAGTACAACTCAACTCATTTAACCTCACTTGAGATCTTGAAGAACTATGGCAAGGGCTTCAAGAGGTTATGTGATGAAGGAAAAAACATGCAGCCAGTTGATGATTTGGCTCTAGTTAAAAATGAAGATGGGAGAAAGCTTTCAACTGAAGATGTCATGAGGATTGCTGGAACAAGGTTCATTCAATCATCTTCAGAATCAGCAGGTTTGCAATCCCTGGTGAATCACCCTTTTGGTTTATCTTTCTCTGAACTCTCAGATGAAGAGAAAGAAGATGTGGAACTTGCTGAATCACTCTTGGCTGCTGCTGAGAAAGTTGGAAATCAACAGTTTGAACGTGCTACCAAATTGTTGAGTCATTGTGAATCATTGTCTTCAAAAACTGGTAACCCCGTTAAGCGTGTTGTTTATTATTTTGCTGAAGCACTTCGCCAGAGGATAGATAGAGAAACAGGAAGAGTTTCATTTGAGGATTTGAAAAAAATGCAATCATTTGATCCTGAAGAGGCATTCAAGGACCTAAACCCTACCCTTTTTGCATTTGATGAAATGCTTCCTTTTTGTCAGGTTGCACGGTTCACAGCAGTTCAAGCTATAATGGAAAATATAACTGAGGCAAAGAAGATTCACATTATTGATCTTGAAATCAGAAAAGGTGTACAATGGCTGATCCTGATGCAATCTCTTGAATCAAGACATGAATGTCCACTAGAGCTTTTAAAGATAACAGCTGTTGGAAGTGGAAATACTTCAATACATATAATTGAGGACACTGGTAAGAGATTGAAAGATTTTGCTCAGAGTTTGAACATACCCTTCTCCTTTAACATAGTTACGGTATCAGACATGCTACATCTCAAAGAAGATCTTTTTGAAAGAGATCCTGAGGAAACAATTGCAGTTTATGCTCCGTATGCACTTGGAGGCAAGATTCAACAACAAAACCAGCTTGAAACTATCATGAGAGTGGTTAGAACCATTAATCCAATTGTAATGGTGGTAGCTGAACTTGAGGCAAATCATAATTCTACAACTTTTGTGAAGCGTTTCATTGAAGCTCTTTTCTACTTCAGTGCATCCTTTGATTGTTTTGCTACTTGTATGGAACGAGATGAGAGACGAATGGCTATAGAATCAGTATACTACAGAGCAATCAAGAATATTGTGGCTGCAGAAGGAGCAGAAAGAAAGGTTCGATATGTAAAGATTGATGTTTGGAGGGCTTTTTTCTCTCGCTTTGGAATGGAGGAGACAGAATTGAGCATGTTATCTATATACCAAGCGGATTTGGTCGCTAAAAGATTTCCTTTTGGAAGTTTTTGCACATTTGATAGGAATGGGCATTGCCTTCTCATTGGATGGAAGGGAACACCATTTTACTCTGTTTCTGTTTGGAAATTCATTTGA 1770 0.3887 MEDLCHFSEFSFSGVEDKYSSSNDSLWATEGLNEVKKVHFSGAEDWGESSGFGFIPNDPTEDEGYLLSTKYHQQPSYEDYGPLDNLQFDMVSPPLQPYLGENIQFDEQNPTMVPLCDPTKDKYNSTHLTSLEILKNYGKGFKRLCDEGKNMQPVDDLALVKNEDGRKLSTEDVMRIAGTRFIQSSSESAGLQSLVNHPFGLSFSELSDEEKEDVELAESLLAAAEKVGNQQFERATKLLSHCESLSSKTGNPVKRVVYYFAEALRQRIDRETGRVSFEDLKKMQSFDPEEAFKDLNPTLFAFDEMLPFCQVARFTAVQAIMENITEAKKIHIIDLEIRKGVQWLILMQSLESRHECPLELLKITAVGSGNTSIHIIEDTGKRLKDFAQSLNIPFSFNIVTVSDMLHLKEDLFERDPEETIAVYAPYALGGKIQQQNQLETIMRVVRTINPIVMVVAELEANHNSTTFVKRFIEALFYFSASFDCFATCMERDERRMAIESVYYRAIKNIVAAEGAERKVRYVKIDVWRAFFSRFGMEETELSMLSIYQADLVAKRFPFGSFCTFDRNGHCLLIGWKGTPFYSVSVWKFI 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4420g00008 589 Pfam GRAS domain family 217 587 IPR005202 -
Gabi4420g00008 589 Coils Coil 207 227 - -
Gabi4420g00008 589 ProSiteProfiles GRAS family profile. 207 587 IPR005202 -
Gabi4420g00008 589 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 189 581 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4420g00008 Gabi-Chr4420 82842 84611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4420g00008 206 588 GRAS Transcription Factor Family AT3G03450 30.127 2.06e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi4420g00008 GRAS 4.7e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4420g00008 - - gmx:100798926 773.081