Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4413g00004 ATGGATAACGACAAATCTCTGGGTCATGGCGGAGGTTTTCCACCTCCGACAGGACGCTATTCGGGTTTCTCACCCACTGGAAGCGCCTTTAACGTGAAATCTGAGCCCTCTTCGTTTCATCAATTGGTTCCGGGAAACAGCTCTGATTCTACTCAATTTGGACATGGAATGTCAACAGATTCTAGTGGCTTTAGTCATGATATTAGCAGGATGCCAGATATTCCCCCGAGGAATAGAGGTCATAGGCGTGCTCATTCCGAGATTCTCACCCTACCTGATGATATTAGCTTTGATAGTGACCTTGGTGTTGTTGGAGGTGCTGATGGGCCCTCATTTTCTGATGACACCGAAGAAGACTTACTGTCCATGTACCTTGATATGGATAAATTCAATTCATCATCGGCTACATCCACATTTCAAATGGGTGAGCCATCAAATGCTGCTGCAGCGCCAGCTTCAGCATTGACACCGGCATCGGGAGCTCCAACCTCTTCTGCAGAGAACATTGTTATTGGTACTAATGAAAGGCCCAGAGTTAGACACCAGCATAGCCAGTCCATGGATGGGTCAACAACCATCAAACCTGAGATGCTAGTCTCAGGTTCAGATGACATGTCTGCAGCTGATTCCAAGAAAGCAATGTCAGCTGCCAAGCTTGCAGAGCTTGCCTTAATTGACCCTAAGCGAGCAAAAAGGATATGGGCAAATAGGCAGTCTGCTGCAAGGTCAAAAGAGAGGAAGATGCGCTACATTGCTGAGCTCGAAAGGAAGGTGCAGACATTGCAAACGGAAGCAACATCTTTGTCTGCACAATTAACGCTATTGCAGAGAGATACAAGTGGACTGAATTCCGAGAACAGCGAGCTTAAACTGCGGTTGCAAACCATGGAGCAACAAGTTCACCTGCAAGATGCATTAAACGATGCGTTAAAAGAGGAAATTCAGCATTTGAAAATACTGACTGGGCAAGCTTTGCCACCTAATGGAGGACCTATGATGAACTTTGCTTCTTTTGGAGGGGGCCAGCAATTCTATCCCAGTAATCATGCCATGCACACTCTTTTAGCTGCTCAACAGTTTCAACAGCTCCAAATTCATCCTCAGAAGCAGCAGCATCAGTTTCAGCAGCTTCAACAGCAACAAATGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGGAACAACAGCATCAGCAATCAGGGGATGTGAAAATGAGAGCAGCTACACCTCCTCCATGCCCCAAAGATAATGCTTCATCAGATGTAAATCCTTCGGCGGCAAAGGATTGTTGA 1290 0.4674 MDNDKSLGHGGGFPPPTGRYSGFSPTGSAFNVKSEPSSFHQLVPGNSSDSTQFGHGMSTDSSGFSHDISRMPDIPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSTFQMGEPSNAAAAPASALTPASGAPTSSAENIVIGTNERPRVRHQHSQSMDGSTTIKPEMLVSGSDDMSAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTSGLNSENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKILTGQALPPNGGPMMNFASFGGGQQFYPSNHAMHTLLAAQQFQQLQIHPQKQQHQFQQLQQQQMQQQQQQQQLQEQQHQQSGDVKMRAATPPPCPKDNASSDVNPSAAKDC 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4413g00004 429 Gene3D - 227 301 - -
Gabi4413g00004 429 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 226 289 IPR004827 GO:0003700|GO:0006355
Gabi4413g00004 429 MobiDBLite consensus disorder prediction 157 171 - -
Gabi4413g00004 429 SMART brlzneu 224 288 IPR004827 GO:0003700|GO:0006355
Gabi4413g00004 429 MobiDBLite consensus disorder prediction 21 66 - -
Gabi4413g00004 429 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 40 398 - -
Gabi4413g00004 429 Pfam bZIP transcription factor 228 286 IPR004827 GO:0003700|GO:0006355
Gabi4413g00004 429 Coils Coil 374 397 - -
Gabi4413g00004 429 Coils Coil 244 313 - -
Gabi4413g00004 429 MobiDBLite consensus disorder prediction 384 429 - -
Gabi4413g00004 429 FunFam probable transcription factor PosF21 227 280 - -
Gabi4413g00004 429 CDD bZIP_plant_RF2 229 278 IPR044759 GO:0003700|GO:0006355
Gabi4413g00004 429 MobiDBLite consensus disorder prediction 384 402 - -
Gabi4413g00004 429 MobiDBLite consensus disorder prediction 134 194 - -
Gabi4413g00004 429 SUPERFAMILY Leucine zipper domain 228 279 IPR046347 GO:0003700|GO:0006355
Gabi4413g00004 429 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4413g00004 Gabi-Chr4413 47361 51346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4413g00004 19 357 bZIP Transcription Factor Family AT1G06070 72.566 1.48e-168 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi4413g00004 bZIP_1 2.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4413g00004 - - gmx:100786738 628.632