Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4413g00002 ATGCCGTTTCCGACGAAACCTATGGAAGCGGTGAAGGATTCGGAGGAGTGGAGAAGCCCTTCTAACAACCTATGGGTTGGGAATCTGTCGCCGGAGGTCACCGACTCCGATCTCATGGAGCTCTTTGCTCAATACGGCGCTCTCGATAGCGTCACCACCTATTCGTCTCGGAATTACGCTTTTCTGTTCTTCAAGCGCATTGAAGATGCTAAGGCCGCTAAGACCGCCTTACAAGGCGCTTCTCTGCGCGGGATTCCCATCAGAATTGAGTTTGCCAGACCGGCAAAGCCATGTAAACATCTATGGGTCGGTGGTATTAGCCCAGTTACTACGAAGGAAGAATTGGAAGCAGAATTTCGTAAATTTGGTGAAGTTGAGGATTTTAAGTTCTTCAGAGACCGCAATACTGCATGTGTTGAATTTCTAAATTTGGATGATGCTACTCGGGCCATGAAAATCATGAACGGGAAGTGTATAGGTGGGGACCAGATTCGTGTTGACTTCCTTCGATCACAATCTACAAAAAAAGATCTTTTGGTTGATTATGGACAGTTTCAGGCAAGAATACCGCATTCACAACCTTCAATGGGGAGGAATGGTCAACCCAGTAAGATTTTGTGGATAGGTTTTCCTCCTTCTTTTCAGATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGACATTATTCACTTGTTGAATTTCGAAGTGTTGATGAAGCTCGGCGTGCCAAAGAGGGTCTTGAAGGACGGCTGTTTAATGACCCTCGAATAACAATTATGTATTCAAGCAGTGAGCTGGTACCTGGCTTTTATCCTGGAAGTAAAGGGCCAATACCTGATGTCTTACCTAATGAGCATCCATTTCGACCACTGCAGATGGATGTATTTGGTCATAATCGTCCTCTGGTTCCAAATAATTTTCCAGGACTTTTGCCACCTGGTGGTATTATTGGAACTAATGTTCCAATGCGGCCTTTTGGTCCTCAAGGTCTTGAACCTCTTATCTCTGGTCATGAGTTTAATGAGATGGGCACACTCCACAAATTTCAGGATGGTAGCTCCAAAAGTCAGATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGATTGCTTCCTTCTGTGCCAAATATTAGGCCTCCTACAAGATCCAACTCTGGTGCATGGGATGTACTTGACAACCAATTTCAGAGAGATTCTAAACGTTCAAGGACAGATGGTGCTTTGCTCATTGATGATGCTCGATTTCCTTCAAGGAATATAGATGATCCATTTATTGATGGAGGTGGTTCTGGTCCAAAGAGTCACCTTGGTCCAGTGGGCACTAGGATCACAGCTGGAGGACCTGGTTCTGCCCAACCCGATATTGATCATATATGGCGTGGAACTATTACAAAAGGGGGAACGCCTATTTGTCATGCTAGATGTGTGCCTATTGGGAAAGGGATAGGGACTGAGCTTCCCAATGTTATTGATTGCTCTGCTAGGACGGGATTGGATATACTCACGAAACACTATGCTGATGCAATTGGTTTTGACATTGTTTTCTTTCTCCCTGATAGCGAAGAGGATTTTGCTTCATACACTGATTTCCTTTGTTATCTCAGAGCAAAAAACCGTGCCGGTGTTGCCAAGTTTGTTGATAGCACCACTTTATTCTTGGTACCTCCTTCTGATTTCTTGACCAAGGTTTTGAAAATTACAGGACCTGAACGTTTATATGGTGTGGTTCTTAAATTCCAGCCCGTTCCAGGCAGCTCACCCTCAACTCAGCATATGCAGCAGATTCCTCCTCCACAAGCTGTGTATGGTTCAATTTCTGCAAAGGAGGAACAGATTTCGACAATGGATTATAACAGATTGTTGCATGAGGATTCTAAGCTTCCTCCAAAACCTCTTCATCCAGCTACAAGTGGTCCCCCCTCTGTTCATTCTGTTCCTCCTGATTATGCTTCTACTAATACTGCTTTTGCATCCCAAGCTGGAGTTACATTAACACCTGAGCTTATTGCATCTTTAACTTCTTTACTCCCTGTAACTACACAATCATCTGCCACTTTTGGAGCAATGACAGCAGTTGGCTCCTCGACTGTGAAGCCACCATTTCCTCCTGTTGCACCTAATGATGGAAATAAATCTCATTTTTGGAAGCAAGATCATGAAATTGCAGGTCCACCCAGTCGTCCCCCTCAACAGTTTGTGAGTATGTACAACATTCACAGTGCTCAATATCAGCCTTATCCACCGGCATCTACTACTGCTCCCCCTGCTCAAGTGGTCTCTGGCAGTTCTCATCTCCAAGATACTGCTGCCAACCTGCAGCAGCTAGGTACTGTTTCATCTAGACCCATGACTAATTTCGTCATACCTTCTCAAAGTGGACAGGTAGCTGTATCCCCTCAAGTCAGTCAGCAGTATCAGTATCAGTTTGAAGTGTCCCCCAGCACCCAGAAAGGATATGGAGTGGTTCAGGGAACCGATGCCTCTGTTTTATATGGTTCTGGGGCTGTCCAGCAACCTAATAATTTTACTGCCTCATTTAATCAAGTTCCCAGTGCTAATCCTTCACAGCAACAACCTGTGACGCCCTATACAGTGGACAATGTTAACTCGGAGCCTCCCAATCAGCAACTTCAACCCACTTTCCCTGGTGTTGGTCAGGGTACATCAGAAGTGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCTGCCAACCTTCTCCTCCAGATACAGCAACAGCAAACACAAGGAGGGCACAGCTCAGGAAATCAACAATAA 2832 0.4495 MPFPTKPMEAVKDSEEWRSPSNNLWVGNLSPEVTDSDLMELFAQYGALDSVTTYSSRNYAFLFFKRIEDAKAAKTALQGASLRGIPIRIEFARPAKPCKHLWVGGISPVTTKEELEAEFRKFGEVEDFKFFRDRNTACVEFLNLDDATRAMKIMNGKCIGGDQIRVDFLRSQSTKKDLLVDYGQFQARIPHSQPSMGRNGQPSKILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSLVEFRSVDEARRAKEGLEGRLFNDPRITIMYSSSELVPGFYPGSKGPIPDVLPNEHPFRPLQMDVFGHNRPLVPNNFPGLLPPGGIIGTNVPMRPFGPQGLEPLISGHEFNEMGTLHKFQDGSSKSQMGPNWKRPSPPAPGLLPSVPNIRPPTRSNSGAWDVLDNQFQRDSKRSRTDGALLIDDARFPSRNIDDPFIDGGGSGPKSHLGPVGTRITAGGPGSAQPDIDHIWRGTITKGGTPICHARCVPIGKGIGTELPNVIDCSARTGLDILTKHYADAIGFDIVFFLPDSEEDFASYTDFLCYLRAKNRAGVAKFVDSTTLFLVPPSDFLTKVLKITGPERLYGVVLKFQPVPGSSPSTQHMQQIPPPQAVYGSISAKEEQISTMDYNRLLHEDSKLPPKPLHPATSGPPSVHSVPPDYASTNTAFASQAGVTLTPELIASLTSLLPVTTQSSATFGAMTAVGSSTVKPPFPPVAPNDGNKSHFWKQDHEIAGPPSRPPQQFVSMYNIHSAQYQPYPPASTTAPPAQVVSGSSHLQDTAANLQQLGTVSSRPMTNFVIPSQSGQVAVSPQVSQQYQYQFEVSPSTQKGYGVVQGTDASVLYGSGAVQQPNNFTASFNQVPSANPSQQQPVTPYTVDNVNSEPPNQQLQPTFPGVGQGTSEVEADKNQRYQSTLQFAANLLLQIQQQQTQGGHSSGNQQ 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4413g00002 943 Gene3D - 5 95 IPR012677 -
Gabi4413g00002 943 SUPERFAMILY RNA-binding domain, RBD 200 296 IPR035979 GO:0003676
Gabi4413g00002 943 CDD RRM_SF 101 167 - -
Gabi4413g00002 943 MobiDBLite consensus disorder prediction 364 418 - -
Gabi4413g00002 943 MobiDBLite consensus disorder prediction 638 663 - -
Gabi4413g00002 943 FunFam Flowering time control protein FPA 14 96 - -
Gabi4413g00002 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 165 IPR000504 GO:0003723
Gabi4413g00002 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 86 IPR000504 GO:0003723
Gabi4413g00002 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 270 IPR000504 GO:0003723
Gabi4413g00002 943 SUPERFAMILY RNA-binding domain, RBD 13 96 IPR035979 GO:0003676
Gabi4413g00002 943 MobiDBLite consensus disorder prediction 376 390 - -
Gabi4413g00002 943 CDD RRM_SF 24 90 - -
Gabi4413g00002 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 277 IPR000504 GO:0003723
Gabi4413g00002 943 Gene3D - 192 280 IPR012677 -
Gabi4413g00002 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 171 IPR000504 GO:0003723
Gabi4413g00002 943 PANTHER RNA RECOGNITION MOTIF-CONTAINING 14 92 - -
Gabi4413g00002 943 Gene3D - 96 181 IPR012677 -
Gabi4413g00002 943 SUPERFAMILY RNA-binding domain, RBD 96 175 IPR035979 GO:0003676
Gabi4413g00002 943 CDD SPOC_FPA-like 473 593 - -
Gabi4413g00002 943 MobiDBLite consensus disorder prediction 392 407 - -
Gabi4413g00002 943 Pfam SPOC domain 468 585 IPR012921 -
Gabi4413g00002 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 94 IPR000504 GO:0003723
Gabi4413g00002 943 SMART rrm1_1 205 273 IPR000504 GO:0003723
Gabi4413g00002 943 SMART rrm1_1 23 90 IPR000504 GO:0003723
Gabi4413g00002 943 SMART rrm1_1 100 167 IPR000504 GO:0003723
Gabi4413g00002 943 MobiDBLite consensus disorder prediction 884 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4413g00002 Gabi-Chr4413 30590 39642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4413g00002 4 265 Eukaryotic Initiation Factors Gene Family AT1G22760 24.306 1.29e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4413g00002 - - gmx:100777570 1297.72