Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4412g00001 ATGGGAAATCAGAAGCAAAAGTGGACGGCGGATGAAGAAGACGCGTTGCATCGCGGCGTGCAGAAGCACGGTGCTGGCAAGTGGAAGAACATCCTCAAAGATCCCGAGTTCGCCCCTTTCCTCACTAGCCGTTCCAACATCGACCTTAAGGATAAATGGCGAAATTTAAGTGTTGGCAATGGTCAAGGATCTAAAGATAAGTCTAGGACTCCCAAGATCAAAGCAATAGTTCCAGTTCCTGTTCCAGTTCCTGCTCCTGCTCCAACTCCAGCTCCAGTTGCCGCTCCACAAAATGCTGCTCCTGCTCCTCAAACTCAAACTGATCATCCTTCTCAAAGTCCTCCTCGGTACAATGCAATGATTTTTGAAGCTCTATCATCAATCAAGGATACTAATGGTTCTGACATAAATGCCATTGTTAGTTTCATCGAGCAAAAACACAAGGTTCCTCATAATTTCAGAAGGGCATTAGGTACAAGGTTGAGAAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAGAATTGTTACAAGATAAAAAAGGACACCCCAACGGGGACGAAATTAACTGCACCAAAATCACCTGCTCCAAAACAAGAGGATGTCTGGCCTCGGCAATCACCAGCCTCTAGTTTATTGACATCTATAGAGACAATAAAGGATGCCGCTGATACTGCAGCCTACAGAGTTGCTGATGCGGAGAACAAATCATTTTTGGCCGCTGAGGCAGTGAAGGAGGTGGAAAGAATCTCAAGGCTGGCTGAAGATACTGATTCAATGTTACAGCTCGTGAAAGAGATTTATGAGAAATGTTCGCGTGGTGAAATTGTCCTCTTGGCTTAA 843 0.4508 MGNQKQKWTADEEDALHRGVQKHGAGKWKNILKDPEFAPFLTSRSNIDLKDKWRNLSVGNGQGSKDKSRTPKIKAIVPVPVPVPAPAPTPAPVAAPQNAAPAPQTQTDHPSQSPPRYNAMIFEALSSIKDTNGSDINAIVSFIEQKHKVPHNFRRALGTRLRRLVSQGKLEKVQNCYKIKKDTPTGTKLTAPKSPAPKQEDVWPRQSPASSLLTSIETIKDAADTAAYRVADAENKSFLAAEAVKEVERISRLAEDTDSMLQLVKEIYEKCSRGEIVLLA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4412g00001 280 SUPERFAMILY "Winged helix" DNA-binding domain 111 193 IPR036390 -
Gabi4412g00001 280 CDD H15 111 198 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi4412g00001 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Gabi4412g00001 280 MobiDBLite consensus disorder prediction 99 114 - -
Gabi4412g00001 280 Gene3D - 109 201 IPR036388 -
Gabi4412g00001 280 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Gabi4412g00001 280 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Gabi4412g00001 280 FunFam Telomere repeat-binding factor 1 2 58 - -
Gabi4412g00001 280 MobiDBLite consensus disorder prediction 1 34 - -
Gabi4412g00001 280 PANTHER SINGLE MYB HISTONE 4 1 279 IPR044597 GO:0003691
Gabi4412g00001 280 MobiDBLite consensus disorder prediction 184 207 - -
Gabi4412g00001 280 SMART sant 4 59 IPR001005 -
Gabi4412g00001 280 MobiDBLite consensus disorder prediction 7 21 - -
Gabi4412g00001 280 MobiDBLite consensus disorder prediction 77 97 - -
Gabi4412g00001 280 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 113 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi4412g00001 280 Gene3D - 2 58 - -
Gabi4412g00001 280 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Gabi4412g00001 280 MobiDBLite consensus disorder prediction 53 114 - -
Gabi4412g00001 280 SMART h15plus2 111 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi4412g00001 280 CDD SANT_TRF 6 56 - -
Gabi4412g00001 280 FunFam Telomere repeat-binding factor 1 8 82 - -
Gabi4412g00001 280 Pfam linker histone H1 and H5 family 115 174 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4412g00001 Gabi-Chr4412 7863 13259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4412g00001 1 280 Single Myb Histone (SMH) Gene Family AT1G72740 47.902 9.96e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi4412g00001 Linker_histone 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4412g00001 K09422 - cave:132188703 343.584