Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4411g00001 ATGGATGAATATTCTGGTAAAAGAGGCATTCATGGGGTGGTAGTCCCTGGAAAGGGGATGGGCCATGTGTTTAGAGATACTGCTAATACTAGAGATCGAAATGGTCAAATTTGCAGCCGATTGGGTTGCAGTAGTAGAGCCAACCCTCCTAAAGTTTCTCAAGTTGGATCATCTGAAAAAGGTAAATCTTTGAGGTCTTCAGTCCGGTCCTCTTTAAGGGGCAAGCAAGCAATTGGAAGTTCCTCCAGAGCTACTAGTAACACCGAAAAACCCCTTATAGAGCCTCAGAAAGCATTATCCTCTCAGTTTGGGACAGATTCATCTGAAACTAGTAGTGCGCAGGATGAACCACAAATTTCAGGGCTAATCCCTCCAACAGGAAAAATTCCTAGAGGGCTTCAATCTGAAGGGGAAAGTACAGCGTCTAGTAATGTGATGCTGATGGAAGTAGGAAGCTCTAGTGTAGTATCAAATGCAAGATCTCAAAGGAATTTTCATCAAAGGCCTGGATTGCATGGACGAGAAATTAAAAGCACTGGTCCAGTGACACGTGCTGTTAACAGCAGGTATGGGTTGAGGAACCTCAGATGCAACTCTATATCCGATGTCACCCCAGCTGGTTGTTCATCATCAGATTCAACCCTTTATAGAAGGAAGGATATGATCAAAAAGAGAAACTGTGAAGGAGAAAGTAGTTCCACTGTTGGGAAGAAGATGACCGGGTCTTCATTTGAAAGAAGAAATTCTGGCTGCAGAAATGGCATATGTATCTCCGATTCAAGAGGATCTACAAATATTCCTTCTCACAGGGACAGCAATATATTGGTTAGAACTCAAAGATCAGTTAGTGGTCATGCCAGGGGAAGGTTTTCTAGCAAAGGAAATGAAAACCCCATGGCAACCAATGAGTCCCCTGTTATGGTACCTCTTTTGCCTCATTCTGGTGATCTTAGTGCTCCTAGCATTTCATATCATACTTCTGTAGAGACTCCTTTAAGTCGTCCAAGCTCTTACAATAGACCAGGTACTAGCAGTGAGCAGTTATGTGGTGTTATGTGTGTGTCTCCTGCAGAATACGGCATCACTCATTCTATCATAAATCGGGATAGCTTTCAACGCTACAACATGGATAGTATTGCAGAGGTATTATTGGCACTTGAGAGGATTGAACAAGATGAAGAGCTAACCTCTGAGCAAATTCTTTTACTAGAGACCAACTTGTTCCTTAATGGACTAAACTTCTATGATCATCACAGAGACATGCGGTTGGATATTGATAACATGACGTATGAGGAACTTTTAGCTCTGGAAGAGAGGATGGGTACTGTGAGTACTGCCCTAACAGAGGAAGCTCTTTCAGAATGCCTTAAGAGAAGTATCTATCATTCTGAACCTTCACATGATGCAGCTGAGAGTTCTAATGAGGATAAGGATGATATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGCAGATGAAGTTGGGAGTTTGCAATGCGAGCATAGGTTTCATGTGTTTTGCATACAAGAGTGGCTGCAGCTGAAGAACTGGTGCCCTATTTGCAAAGTATCAGCAGCACCATCCAATTCATCTTCACCTCATTGA 1608 0.4266 MDEYSGKRGIHGVVVPGKGMGHVFRDTANTRDRNGQICSRLGCSSRANPPKVSQVGSSEKGKSLRSSVRSSLRGKQAIGSSSRATSNTEKPLIEPQKALSSQFGTDSSETSSAQDEPQISGLIPPTGKIPRGLQSEGESTASSNVMLMEVGSSSVVSNARSQRNFHQRPGLHGREIKSTGPVTRAVNSRYGLRNLRCNSISDVTPAGCSSSDSTLYRRKDMIKKRNCEGESSSTVGKKMTGSSFERRNSGCRNGICISDSRGSTNIPSHRDSNILVRTQRSVSGHARGRFSSKGNENPMATNESPVMVPLLPHSGDLSAPSISYHTSVETPLSRPSSYNRPGTSSEQLCGVMCVSPAEYGITHSIINRDSFQRYNMDSIAEVLLALERIEQDEELTSEQILLLETNLFLNGLNFYDHHRDMRLDIDNMTYEELLALEERMGTVSTALTEEALSECLKRSIYHSEPSHDAAESSNEDKDDIKCCICQEEYVVADEVGSLQCEHRFHVFCIQEWLQLKNWCPICKVSAAPSNSSSPH 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4411g00001 535 MobiDBLite consensus disorder prediction 158 177 - -
Gabi4411g00001 535 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 66 527 IPR045191 GO:0061630
Gabi4411g00001 535 FunFam E3 ubiquitin-protein ligase arkadia 444 528 - -
Gabi4411g00001 535 Pfam Ring finger domain 481 523 IPR001841 -
Gabi4411g00001 535 SMART ring_2 482 522 IPR001841 -
Gabi4411g00001 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 528 IPR013083 -
Gabi4411g00001 535 MobiDBLite consensus disorder prediction 232 246 - -
Gabi4411g00001 535 MobiDBLite consensus disorder prediction 19 141 - -
Gabi4411g00001 535 ProSiteProfiles Zinc finger RING-type profile. 482 523 IPR001841 -
Gabi4411g00001 535 SUPERFAMILY RING/U-box 475 526 - -
Gabi4411g00001 535 MobiDBLite consensus disorder prediction 281 301 - -
Gabi4411g00001 535 MobiDBLite consensus disorder prediction 227 246 - -
Gabi4411g00001 535 MobiDBLite consensus disorder prediction 30 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4411g00001 Gabi-Chr4411 8667 14024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4411g00001 379 526 C3H Transcription Factor Family AT2G15530 43.624 4.49e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4411g00001 - - gmx:100812055 762.681