Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi440g00008 ATGGTTTCAAGATATGATTTTATAAAGGATCTTAATCCTACAAAGGAGGACTGGAGGATTAAGGTTAAGGTTGTTCGATCTTGGCAGGTTCCTAACTTTCAACGTAAAGGTTTAGACGACAATGTTGAGATGGTTATGTTGGATGAACGGGGTGGAAGGATCCATGCCACTGTCAAGGGAACTCTGCAAGTCCGAAAAAAAATCACGGATGGAAAGGTGAATTTTATTAAAAATTTCGGAGTTGGATTCAGTAACGGTAATTTTAGGCCAACCCGACATGATTATCGTCTGTCTTTCAACTTGAGGACTGATGTTAGATCGATTGTTCAACCTAATTTTCCTGCGAATGTATTTGATTTTGTTGATTACAATGTCATTGAGAAAGAATCGTCGGAGTCTCCTTATTTAATAGACATCATTGGTTTACTGTCAGGAGTTGGGGAAGTTTGTGAGCATGTAGTTTCCGGCAGGAAAACAAAGATGATTGTGTTGGAACTTGACAATCTCAGGGGTCACAAGCTGGAATGCACTTTGTGGGAGCATTATGTGGATGAGGTACAATCTTTTTTGGCAAGCAGTAACACTCCTCATAAGCTTCTGTACTATGTTATACATCGATGGATGTTCATTGTTTCTGTATTGGATAGTCTATCGTCCGATGGTGTGGAAAGTAGTTTGAGATTGACTCAATTGTCTACTCAGTCCTCATATTCATATGAAAATGATTTTCTTAAGGAGACGGACAGAAAGTCAATCAGTGATATCAAGCTCTATAGTGAGGTGACCACATGCATCACATATGGGACTATAAAATCGATTGAGAGCAGATACAACTGGTGGTACAAGTCGTGCAATAAGTGTCCATTTTCTGTTTGTGAAGATTTTGAAAAATGGTACTGTAAAAACTGCCACAAACATTGGGAAGATTATTACCTTAGATTTAGTGTTCAAGTCAGAGTTGTGGATAACACAGCTTCTGCTTCTTTTCTGTTGTTTGATCGAGACTGTATTACTTTGTTGGGAATGAGTGCTGCTGAATTGCGAGAATTGCATTTCAAGAGGGATGAAGCAACTTTTGATAATGCTCACGAAAATGAAATTTTATCATCAGAACCAGAGAAGGCTGCTGATGTTAAAAGTCAGACATGTGACAATGCTGATGTTGGTGACATTTCTCTAACTTTATTGACACGACGATGA 1200 0.3858 MVSRYDFIKDLNPTKEDWRIKVKVVRSWQVPNFQRKGLDDNVEMVMLDERGGRIHATVKGTLQVRKKITDGKVNFIKNFGVGFSNGNFRPTRHDYRLSFNLRTDVRSIVQPNFPANVFDFVDYNVIEKESSESPYLIDIIGLLSGVGEVCEHVVSGRKTKMIVLELDNLRGHKLECTLWEHYVDEVQSFLASSNTPHKLLYYVIHRWMFIVSVLDSLSSDGVESSLRLTQLSTQSSYSYENDFLKETDRKSISDIKLYSEVTTCITYGTIKSIESRYNWWYKSCNKCPFSVCEDFEKWYCKNCHKHWEDYYLRFSVQVRVVDNTASASFLLFDRDCITLLGMSAAELRELHFKRDEATFDNAHENEILSSEPEKAADVKSQTCDNADVGDISLTLLTRR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi440g00008 399 Pfam Replication factor-A C terminal domain 266 365 IPR013955 -
Gabi440g00008 399 SUPERFAMILY Nucleic acid-binding proteins 6 106 IPR012340 -
Gabi440g00008 399 SUPERFAMILY Nucleic acid-binding proteins 247 364 IPR012340 -
Gabi440g00008 399 Gene3D - 112 208 IPR012340 -
Gabi440g00008 399 Pfam Domain of unknown function DUF223 43 131 IPR003871 -
Gabi440g00008 399 Gene3D - 233 379 IPR012340 -
Gabi440g00008 399 PANTHER OS03G0429900 PROTEIN 7 180 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi440g00008 399 CDD RPA1_DBD_C 252 360 IPR047192 -
Gabi440g00008 399 CDD RPA1_DBD_A_like 19 105 - -
Gabi440g00008 399 Gene3D - 5 107 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi440g00008 Gabi-Chr440 52964 55632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi440g00008 1 356 Core DNA Replication Machinery Family AT5G08020 23.000 4.77e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi440g00008 - - adu:107477146 221.476