Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi440g00005 ATGCCAGGGAAACCTGAAACTGATGATTGGCGAGTAGAGCATGGTGAGCAGATTCAGTTTCAATCTTCCATTTACTCTCATCAGCCTTGGTGGCATAGAGTGAGGGAAAATGCCTCCAAATCATCTTCAACAGATCAGCTAAATGGTTCAATCATGAATGGTTTCACACTTTCAGAGACCAATGAAGGCCTATCTAAGGGAATTGGTCTCAATAAACAAAGGCAACCAATGGTTTCTCCTTCACTGTCTGGAACTGATAAATCAGGTGGGGATGTTGCTAAAGAGCACCAAAACATCAAACATGCCCTGTCCTCAACCCCTTTTACCATGGACAAACACCTTGGTCCAAATTCCCAGATGAAACTTGTTGGTCATTCAATTGTCTTAACACCTTATCCTTATTCAGATGCACAGTATGGTGGAATCTTGACTACTTATGGGCAACAAGCTATGATAAACCCTCAGTTATATGGAATGCATCATGCGAGAATGCCTTTGCCGCTCGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCCCGTGCTAAGGCCGAGCTTGAAAAGAAAGTGATTAAAGCTAGAAAGCCATATCTCCATGAATCCCGTCACCAACATGCTATGAGAAGGGCAAGGGGCAATGGAGGCCGCTTTCTCAATACAAAGAAGCTCGAAGATAACAATTCCGATGCCACTTTAGAAAAAGGCCACAATACTGGTGCAAACCCTTCAACAACCTCACCTACCGCTCAACATTTGTTAACCAACAATGAGAATCTAGGCTCATCAAATGCGTCACAGTCCGGGGTTCAGGACATGCACAAAGTGCTGAGTTTCAACATTGGTTACCATGATGGTAATGGTCGTACAACACTGTACCATTCACAGTTAAATGGAAGAAATGAAGGAGACTGCTTTGGTAAAGAGAGGGAAATCATGCGCATGCGTATGCATGGAGCCCCAAATGGGGCTATTAAATAA 1011 0.4352 MPGKPETDDWRVEHGEQIQFQSSIYSHQPWWHRVRENASKSSSTDQLNGSIMNGFTLSETNEGLSKGIGLNKQRQPMVSPSLSGTDKSGGDVAKEHQNIKHALSSTPFTMDKHLGPNSQMKLVGHSIVLTPYPYSDAQYGGILTTYGQQAMINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGNGGRFLNTKKLEDNNSDATLEKGHNTGANPSTTSPTAQHLLTNNENLGSSNASQSGVQDMHKVLSFNIGYHDGNGRTTLYHSQLNGRNEGDCFGKEREIMRMRMHGAPNGAIK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi440g00005 336 MobiDBLite consensus disorder prediction 206 221 - -
Gabi440g00005 336 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Gabi440g00005 336 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 37 278 IPR001289 GO:0003700|GO:0006355
Gabi440g00005 336 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Gabi440g00005 336 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Gabi440g00005 336 MobiDBLite consensus disorder prediction 73 92 - -
Gabi440g00005 336 Gene3D - 171 232 - -
Gabi440g00005 336 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Gabi440g00005 336 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Gabi440g00005 336 MobiDBLite consensus disorder prediction 204 279 - -
Gabi440g00005 336 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Gabi440g00005 336 MobiDBLite consensus disorder prediction 243 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi440g00005 Gabi-Chr440 36980 43803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi440g00005 121 275 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.968 1.05e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gabi440g00005 CBFB_NFYA 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi440g00005 K08064 - gmx:100782085 464.151