Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi440g00004 ATGCCAGGGAAACCTGAAACTGATGATTGGCGAGTAGAGCATGGTGAGCAGATTCAGTTTCAATCTTCCATTTACTCTCATCAGCCTTGGTGGCATAGAGTGAGGGAAAATGCCTCCAAATCATCTTCAACAGATCAGCTAAATGGTTCAATCATGAATGGTTTCACACTTTCAGAGACCAATGAAGGCCTATCTAAGGGAATTGGTCTCAATAAACAAAGGCAACCAATGGTTTCTCCTTCACTGTCTGGAACTGATAAATCAGGTGGGGATGTTGCTAAAGAGCACCAAAACATCAAACATGCCCTGTCCTCAACCCCTTTTACCATGGACAAACACCTTGGTCCAAATTCCCAGATGAAACTTGTTGGTCATTCAATTGTCTTAACACCTTATCCTTATTCAGATGCACAGTATGGTGGAATCTTGACTACTTATGGGCAACAAGCTATGTTATATGGAATGCATCATGCGAGAATGCCTTTGCCGCTCGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCCCGTGCTAAGGCCGAGCTTGAAAAGAAAGTGATTAAAGCTAGAAAGCCATATCTCCATGAATCCCGTCACCAACATGCTATGAGAAGGGCAAGGGGCAATGGAGGCCGCTTTCTCAATACAAAGAAGCTCGAAGATAACAATTCCGATGCCACTTTAGAAAAAGGCCACAATACTGGTGCAAACCCTTCAACAACCTCACCTACCGCTCAACATTTGTTAACCAACAATGAGAATCTAGGCTCATCAAATGCGTCACAGTCCGGGGTTCAGGACATGCACAAAGTGCTGAGTTTCAACATTGGTTACCATGATGGTAATGGTCGTACAACACTGTACCATTCACAGTTAAATGGAAGAAATGAAGGAGACTGCTTTGGTAAAGAGAGGGAAATCATGCGCATGCGTATGCATGGAGCCCCAAATGGGGCTATTAAATAA 999 0.4354 MPGKPETDDWRVEHGEQIQFQSSIYSHQPWWHRVRENASKSSSTDQLNGSIMNGFTLSETNEGLSKGIGLNKQRQPMVSPSLSGTDKSGGDVAKEHQNIKHALSSTPFTMDKHLGPNSQMKLVGHSIVLTPYPYSDAQYGGILTTYGQQAMLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGNGGRFLNTKKLEDNNSDATLEKGHNTGANPSTTSPTAQHLLTNNENLGSSNASQSGVQDMHKVLSFNIGYHDGNGRTTLYHSQLNGRNEGDCFGKEREIMRMRMHGAPNGAIK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi440g00004 332 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 37 274 IPR001289 GO:0003700|GO:0006355
Gabi440g00004 332 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 224 IPR001289 GO:0003700|GO:0006355
Gabi440g00004 332 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700|GO:0006355
Gabi440g00004 332 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700|GO:0006355
Gabi440g00004 332 MobiDBLite consensus disorder prediction 73 92 - -
Gabi440g00004 332 MobiDBLite consensus disorder prediction 202 217 - -
Gabi440g00004 332 ProSitePatterns NF-YA/HAP2 subunit signature. 172 192 IPR018362 GO:0003677|GO:0016602
Gabi440g00004 332 SMART cbf3 166 227 IPR001289 GO:0003700|GO:0006355
Gabi440g00004 332 MobiDBLite consensus disorder prediction 200 275 - -
Gabi440g00004 332 Gene3D - 167 228 - -
Gabi440g00004 332 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
Gabi440g00004 332 MobiDBLite consensus disorder prediction 239 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi440g00004 Gabi-Chr440 36980 43804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi440g00004 22 315 CCAAT-HAP2 Transcription Factor Family AT3G20910 37.624 1.36e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gabi440g00004 CBFB_NFYA 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi440g00004 K08064 - gmx:100782085 449.899