Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4406g00004 ATGGACGGTTACGATGGAACGGTGAGGCTTGGAGCCATTAACTTGAAGCATGATCGCAGTGATTTTGACTCTGGACCCGATGTATCTGTTTCATCTCCGGTTACGAGACAGAAGGCCGCTGCGGCTAAGCAATTCATCGAGAATCATTACAAGAATTATCTCCAAGGATTGCAGGATCGCAAAGACAGACGCAGAGCGCTTCAAAGGAAAGTGCAAGAATCTCAAATATCAGCTGAAGAGCAGGAGGAAATGATGAGGAATTTGGAGCGCCGAGAAACTGCGTACATGAGGCTTCAGAGACGTAAAATTGGAATTGATGACTTTGAGCAATTAACAGTAATTGGTAAAGGTGCTTTTGGTGAGGTGAGGTTATGTCGTGCTAAAAGTACAGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTTAGAGATGCTTAACCGCGGACAGGTTGAACATGTTCGATCTGAGAGGAACTTGCTGGCAGAGGTTGATAGTAGATGCATAGTAAAACTCCATTATTCATTCCAAGATTCGGATTTCCTATATCTCATCATGGAATATTTACCTGGTGGTGACATTATGACATTGTTAATGAGAGAAGATACTCTTTCTGAAGATGTTGCTCGCTTCTACATTGCTGAAAGCATTCTTGCTATCCATTCAATACATCAATACAACTATGTGCATAGGGACATAAAACCAGATAACCTGATACTGGATAAAAATGGCCATTTGAAGCTTTCAGACTTCGGCTTATGCAAGCCTCTTGATGATAAGTATTCAACAATTTTATTGGAAAATGAAGATTTTACCAGTGAAGAATCATCCAGTGAAACTGATGGATATTGTCCCTCCCCTTGGTTGATGCCAAAGGAGCAATTACAACAGTGGAAACGTAATCGCCGTGCATTGGCATATTCAACTGTTGGAACCCTTGATTATATGGCTCCTGAAGTTTTGCTCAAGAAGGGCTATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCGATCATGTATGAGATGCTTATTGGATATCCTCCATTTTTTTCTGATGAGCCGAGGACTGCCTGCCGCAAGATTGTTAGCTGGAAAACATGCCTGAAATTCCCTGAAGAACCCAAGATATCAGCTGAAGCTAAGGATCTGATCTGTCGCTTACTATGTGATGTTGACACAAGACTAGGAACTAGAGGAGTAGAAGAAATAAAGGCTCATCCATGGTTCAAGTGTATTCAGTGGGACATGCTTTATGAATTGGAAGCTGCATATAAACCTATGGTCACTGGAGACTTGGACACGCAAAACTTTGAGAAGTTTCCTGATGTAGACGGCCCACCATCCATAACGGCAACTGTGGGACCTTGGCGGAAGATGTTGACATCCAAAGACACCAATTTCATAGGATATACTTATAAGAAGTCAGACATCCTTAAATCGCTTGAAAATTCAGGGGATGCTGATGTCAGAGTAAATGGATCATCAAATACCCCTTCCTTGATTTCCTTGTTAGGTCGGATTGATTTGCAAGATACTTCCATTTCAGAAAGTGAGCAGAAGCCAGAAACTTGA 1569 0.4181 MDGYDGTVRLGAINLKHDRSDFDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRKVQESQISAEEQEEMMRNLERRETAYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKSTGEIFAMKKLKKLEMLNRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDTLSEDVARFYIAESILAIHSIHQYNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLENEDFTSEESSSETDGYCPSPWLMPKEQLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLIGYPPFFSDEPRTACRKIVSWKTCLKFPEEPKISAEAKDLICRLLCDVDTRLGTRGVEEIKAHPWFKCIQWDMLYELEAAYKPMVTGDLDTQNFEKFPDVDGPPSITATVGPWRKMLTSKDTNFIGYTYKKSDILKSLENSGDADVRVNGSSNTPSLISLLGRIDLQDTSISESEQKPET 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4406g00004 522 Pfam Protein kinase domain 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4406g00004 522 SMART pkinase_C_6 409 473 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi4406g00004 522 SMART serkin_6 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4406g00004 522 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Gabi4406g00004 522 Gene3D Phosphorylase Kinase; domain 1 427 437 - -
Gabi4406g00004 522 CDD MobB_NDR_LATS-like 42 103 - -
Gabi4406g00004 522 SUPERFAMILY Protein kinase-like (PK-like) 83 459 IPR011009 -
Gabi4406g00004 522 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi4406g00004 522 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 446 - -
Gabi4406g00004 522 ProSiteProfiles Protein kinase domain profile. 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4406g00004 522 Coils Coil 64 101 - -
Gabi4406g00004 522 FunFam Non-specific serine/threonine protein kinase 79 191 - -
Gabi4406g00004 522 FunFam Non-specific serine/threonine protein kinase 192 259 - -
Gabi4406g00004 522 FunFam Non-specific serine/threonine protein kinase 307 426 - -
Gabi4406g00004 522 Pfam Protein kinase C terminal domain 427 471 IPR017892 GO:0004674|GO:0005524|GO:0006468
Gabi4406g00004 522 Gene3D Transferase(Phosphotransferase) domain 1 192 259 - -
Gabi4406g00004 522 Gene3D Transferase(Phosphotransferase) domain 1 307 426 - -
Gabi4406g00004 522 CDD STKc_NDR_like 106 472 - -
Gabi4406g00004 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Gabi4406g00004 522 Gene3D Phosphorylase Kinase; domain 1 70 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4406g00004 Gabi-Chr4406 21235 31204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4406g00004 1 519 AGC Kinase Gene Family AT5G09890 76.392 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Gabi4406g00004 Pkinase 1.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4406g00004 K08790 - gmx:100814085 938.332