Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4400g00012 ATGCAAGCTGATGAGGATGTAGGGAAGATTGCAATGGCTGTGCCTCTTCTAGTTTCCAAAGCACTAGAGCTATTTCTGCAAGATTTGTGTGATCGAACATATGAGATAACTCTAATGAGGGGGGCAAAGACCATGAATGCTTTTCATTTAAAACAGTGTGTACAGACTTTTAATGTCTTTGATTTTCTGAAAGATATTGTCAGCAAGGTTCCTGATTTAGGTGGTTCAGTTGCAACTGGTGACGATCATACTGTCACTAAGAGGAGGAAAGTTGCCGGAGATGATGGTAATGACAGCGATGAGGAAACCAAGAGAAGTAAGATGCCAGAACCTGGACATACCAGTGGCAGAGGAAGGGGTAGGGGAAGAGGCAGGGGTCGTGGTCGAGGAAGTAGAACAGTAGATCAAGAGATGACTACACATGTCAAGTTTGAAGACGATTCCGATGTATTGAAGCAAAATGACAAGCACACTCAAAGCAATGAAAGCTTGGAAAATGTGTCAGAAGTTAAGCAGAGTTTTCCAGTTAACGAACCGGCTGAAGTATGCATTCGAAATTTTGACTTAAATTTGAACCCAGATGAGGACATGGATTTGTTAGTACCAACTCCTGTCCCAACTAGTTCATCAACAAAATCAATGTCAGAAGAGAAGCATGAGGAATACCCTGGATGGTCCTTGTCTGATGTGGAAAAAATGGCAATTGATCCCATGCAACTGGCCAACTTAAATAGAAGGACTGATGAAGATGAGGAGGATTATGATGAAGAAATCTAG 777 0.4196 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLMRGAKTMNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSVATGDDHTVTKRRKVAGDDGNDSDEETKRSKMPEPGHTSGRGRGRGRGRGRGRGSRTVDQEMTTHVKFEDDSDVLKQNDKHTQSNESLENVSEVKQSFPVNEPAEVCIRNFDLNLNPDEDMDLLVPTPVPTSSSTKSMSEEKHEEYPGWSLSDVEKMAIDPMQLANLNRRTDEDEEDYDEEI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4400g00012 258 Gene3D Histone, subunit A 1 69 IPR009072 GO:0046982
Gabi4400g00012 258 MobiDBLite consensus disorder prediction 128 159 - -
Gabi4400g00012 258 MobiDBLite consensus disorder prediction 73 172 - -
Gabi4400g00012 258 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 54 IPR003958 -
Gabi4400g00012 258 SUPERFAMILY Histone-fold 1 71 IPR009072 GO:0046982
Gabi4400g00012 258 MobiDBLite consensus disorder prediction 239 258 - -
Gabi4400g00012 258 MobiDBLite consensus disorder prediction 203 229 - -
Gabi4400g00012 258 MobiDBLite consensus disorder prediction 82 117 - -
Gabi4400g00012 258 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4400g00012 Gabi-Chr4400 55897 60901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4400g00012 1 112 CCAAT-HAP5 Transcription Factor Family AT3G12480 66.102 1.38e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gabi4400g00012 CBFD_NFYB_HMF 6e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4400g00012 K21752 - gmx:100814800 379.407