Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4400g00004 ATGTCAAGTGTAGCAACACACTGGTGTTATTCATGCAGGCAGCCAATTGTGCTTGACGTGGGAGATGTTGTTTGCCCTATCTGTGATGATGGGTTTGTACAAGAACTTAATGAGTTGCAAGGAAATGAACCCCAACATACCACTTCATCACAGCTGGGAGAGTTTCATCAATTTCCTGACATTTTGGATGCTATAAATGCTTTTATGGGGCGGAGAGGTTCTGACCCGAGACAAAGGGTTAGGAACCCTGTTGATAATTTCATGAGGCACAGAATGGCTGGAAGACACCCAGACTTTGATATTAGAGGGAGGTCTGGTTCTGCCCCAGTTCCTGAACAGAGTTGGGGTGTTTATAGTTCTGGTCCTTATTTAATATTTCATGGTCAAGTTCCTGGATTCAGCTTGTCTAATGGCAGCCCAAGAAGTGGTCCCAGACGCGGTGATTTTAGTGACTTCTTTATGGGCCCTGGACTGGAAGAACTTATTGATCAACTCACCATGAATGATAGGCACGGTCCACCCCCCGCCACTCGTTCTTCAATTGATGCGATGCCTACTATTCAGATCACACAGGCACATCTTCGATCAGATTCACACTGTCCAGTTTGTAAAGAAAGATTTGAACTGGGCTCTGAAGCCAGAGAGATGCCATGCAACCATTTTTACCATTCTGACTGCATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCAAGGACAGGTTAGTGCTTGCAGTAGTCGAACTTTGGCTGCAAGAAATGCCAACAGCAGTGGTGGCAATGATAGCTCCAGCAGCAGGGATAATAGCAATCAAAACCACGGAAGGAGAAATCCACTATCATTTTTGTGGCCATTCCGTTCTTCTAGTTCAAACAGTAATCATTATGCTGAGACTGGGGGAAGCAGCTCTTCAACCTCTTCTGACCAGAATAATGGAACAAGATATAGTGGATGGCCCTTTAATCACTAA 996 0.4528 MSSVATHWCYSCRQPIVLDVGDVVCPICDDGFVQELNELQGNEPQHTTSSQLGEFHQFPDILDAINAFMGRRGSDPRQRVRNPVDNFMRHRMAGRHPDFDIRGRSGSAPVPEQSWGVYSSGPYLIFHGQVPGFSLSNGSPRSGPRRGDFSDFFMGPGLEELIDQLTMNDRHGPPPATRSSIDAMPTIQITQAHLRSDSHCPVCKERFELGSEAREMPCNHFYHSDCIVPWLVQHNSCPVCRVELPPQGQVSACSSRTLAARNANSSGGNDSSSSRDNSNQNHGRRNPLSFLWPFRSSSSNSNHYAETGGSSSSTSSDQNNGTRYSGWPFNH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4400g00004 331 Pfam Ring finger domain 199 241 IPR001841 -
Gabi4400g00004 331 MobiDBLite consensus disorder prediction 261 289 - -
Gabi4400g00004 331 FunFam E3 ubiquitin-protein ligase RING1-like 164 247 - -
Gabi4400g00004 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Gabi4400g00004 331 MobiDBLite consensus disorder prediction 302 331 - -
Gabi4400g00004 331 SUPERFAMILY RING/U-box 180 247 - -
Gabi4400g00004 331 CDD RING-H2_RNF126-like 200 241 - -
Gabi4400g00004 331 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Gabi4400g00004 331 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Gabi4400g00004 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 94 245 - -
Gabi4400g00004 331 SMART ring_2 200 240 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4400g00004 Gabi-Chr4400 32058 34672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4400g00004 172 295 C3H Transcription Factor Family AT1G68180 39.516 1.61e-24 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4400g00004 K11982 - gmx:100813674 526.168