LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4400g00003	ATGGCTATTACCTTCTCAGATCTACACACCGAGGGGGGTCTCAAATCCCTCGATGAATTCCTTTCTGGGAAGACCTATATTTCTGAGGATCAATTGACAAAGGATGATATCAAAGTGTATGCAGCTGTTTTGGAAAAGCCAGGTGACTCATTTCCCAATGCTGCCAACTGGTACGATGTTGTCTCCTCAAATCTTGCTGCAAGCTTCCCTGGGAATGCTCAAGGGGTAAAATTCAGTGGGAAATCTGCTCCAGCTGAAGCTGCACCTGCAAAAGCGGATGCTCCTGCGGCAGATGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAGGAAAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCCACCAAGAAGAAAGAAAGTGGTAAGTCTTCCGTTCTGCTTGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGTAGCATTGAGATGCCTGGTTTATTGTGGGGAGCATCCAAACTGGTTCCAGTGGGATACGGGATCAAGAAGCTGCAGATAATGATGACTATTGTTGATGACCTTGTATCTGTGGACTCCCTCATTGAGGAATATCTGACAGTTGAGCCATGCAACGAGTATGTTCAAAGCTGTGACATTGTGGCATTCAACAAAATTTAA	672	0.4568	MAITFSDLHTEGGLKSLDEFLSGKTYISEDQLTKDDIKVYAAVLEKPGDSFPNAANWYDVVSSNLAASFPGNAQGVKFSGKSAPAEAAPAKADAPAADDDDDLDLFGDETEEEKKAAEEREAAKKPTKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEEYLTVEPCNEYVQSCDIVAFNKI	223

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4400g00003	223	MobiDBLite	consensus disorder prediction	109	135	-	-
	Gabi4400g00003	223	Pfam	EF-1 guanine nucleotide exchange domain	136	223	IPR014038	GO:0003746\|GO:0006414
	Gabi4400g00003	223	Gene3D	-	127	223	IPR014717	-
	Gabi4400g00003	223	MobiDBLite	consensus disorder prediction	77	135	-	-
	Gabi4400g00003	223	CDD	EF1B	132	223	IPR014038	GO:0003746\|GO:0006414
	Gabi4400g00003	223	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	212	223	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Gabi4400g00003	223	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	99	107	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Gabi4400g00003	223	SMART	EF1_GNE_2	134	223	IPR014038	GO:0003746\|GO:0006414
	Gabi4400g00003	223	FunFam	Elongation factor 1-beta 1 like	128	223	-	-
	Gabi4400g00003	223	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	8	223	-	-
	Gabi4400g00003	223	SUPERFAMILY	GST C-terminal domain-like	11	65	IPR036282	-
	Gabi4400g00003	223	SUPERFAMILY	eEF-1beta-like	131	223	IPR036219	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4400g00003	Gabi-Chr4400	23264	27950	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4400g00003	1	223	Eukaryotic Initiation Factors Gene Family	AT5G12110	74.561	9.08e-109	310

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4400g00003	K03232		-	gmx:100500082	329.717