LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4400g00002	ATGGCTATTACCTTCTCAGATCTACACACCGAGGGGGGTCTCAAATCCCTCGATGAATTCCTTTCTGGGAAGACCTATATTTCTGAGGATCAATTGACAAAGGATGATATCAAAGTGTATGCAGCTGTTTTGGAAAAGCCAGGTGACTCATTTCCCAATGCTGCCAACTGGTACGATGTTGTCTCCTCAAATCTTGCTGCAAGCTTCCCTGGGAATGCTCAAGGGGTAAAATTCAGTGGGAAATCTGCTCCAGCTGAAGCTGCACCTGCAAAAGATGCTCCTGCGGCAGATGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAGGAAAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCCACCAAGAAGAAAGAAAGTGGTAAGTCTTCCGTTCTGCTTGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGTAGCATTGAGATGCCTGGTTTATTGTGGGGAGCATCCAAACTGGTTCCAGTGGGATACGGGATCAAGAAGCTGCAGATAATGATGACTATTGTTGATGACCTTGTATCTGTGGACTCCCTCATTGAGGAATATCTGACAGTTGAGCCATGCAACGAGTATGTTCAAAGCTGTGACATTGTGGCATTCAACAAAATTTAA	669	0.4544	MAITFSDLHTEGGLKSLDEFLSGKTYISEDQLTKDDIKVYAAVLEKPGDSFPNAANWYDVVSSNLAASFPGNAQGVKFSGKSAPAEAAPAKDAPAADDDDDLDLFGDETEEEKKAAEEREAAKKPTKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEEYLTVEPCNEYVQSCDIVAFNKI	222

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4400g00002	222	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	8	222	-	-
	Gabi4400g00002	222	FunFam	Elongation factor 1-beta 1 like	127	222	-	-
	Gabi4400g00002	222	MobiDBLite	consensus disorder prediction	77	134	-	-
	Gabi4400g00002	222	SMART	EF1_GNE_2	133	222	IPR014038	GO:0003746\|GO:0006414
	Gabi4400g00002	222	Pfam	EF-1 guanine nucleotide exchange domain	135	222	IPR014038	GO:0003746\|GO:0006414
	Gabi4400g00002	222	MobiDBLite	consensus disorder prediction	108	134	-	-
	Gabi4400g00002	222	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	211	222	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Gabi4400g00002	222	CDD	EF1B	131	222	IPR014038	GO:0003746\|GO:0006414
	Gabi4400g00002	222	Gene3D	-	126	222	IPR014717	-
	Gabi4400g00002	222	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	98	106	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Gabi4400g00002	222	SUPERFAMILY	eEF-1beta-like	130	222	IPR036219	-
	Gabi4400g00002	222	SUPERFAMILY	GST C-terminal domain-like	11	65	IPR036282	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4400g00002	Gabi-Chr4400	23262	27956	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4400g00002	1	222	Eukaryotic Initiation Factors Gene Family	AT5G12110	75.439	2.13e-109	311

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4400g00002	K03232		-	gmx:100500082	325.865