Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4400g00001 ATGGATTGTGATCAAGAAAACAAGTTCGATGATGATTTACATCAGAAGGACGATGATAAGAAAGAAGGGTTAGATCATGCCAAGAATTCCTCTGAAGAGAAAGAGAAGATGAATAGTCCAGTACCTTCTGAGTCTTCTGAAGTTGGTAATAAACCAAAGGGTAAAGAAGGGTCGCCAGATCAGAAATCTGCAGCTTCAGGAATACACAAGTGTGTGTTCTGTGGGAAGGAGTTTAAATGTGGAAAAGCGTTAGGTGGCCACAAAAGATTCCACCTTCAAGCTCAGAAGAAGAAGGACAAGGAGGATAAAAAGGCGGCTATTAGTAATGAGATCAAGATGTCTTCTTTGATGTCTAATGGGAAACACTGTTGTTTACTTTGTGACAAGGATTTCCCATCACAAAAGTCCTTGTATGGGCATATGAGGTCCCACCCTGATAGGGTTTGGAGGGGTGTTTGCCCTCCAACAACAACCTCTGATAAGCAAGGTTCTAGTTCCCCAAACTCTGCCTCTATAGAAGAGATTAAACATGATAATTTTGATTTTGGTGCAGTTGTTGTTGCACCAAATAAACCAGCTATTGATCTATCAAAAATTCTACCCCCAACCTGGCGTAAAACCTATAGAAGAGGCAGGGAAAGTCTTTATAGTGCTGAGACTTTTGAAGCATCTAAAATTATTATGTCTTTGTCTAAGGGTAGTTTGCCATGTGATAAGAATAAGAAAGGAAAGCAATTGATTGAATTCGAGGATGAGAAGGAGAAGGAGGAGGAGCATAGGTATGCTAAGTGGATTAGAGAGGAGTGTAATTATGTGAAGAAGATGAAAAGAGCATGGAATGGTATGAACACTCATGAAGCATCATCTAGTGGGGTGAAAGATCAT 885 0.4011 MDCDQENKFDDDLHQKDDDKKEGLDHAKNSSEEKEKMNSPVPSESSEVGNKPKGKEGSPDQKSAASGIHKCVFCGKEFKCGKALGGHKRFHLQAQKKKDKEDKKAAISNEIKMSSLMSNGKHCCLLCDKDFPSQKSLYGHMRSHPDRVWRGVCPPTTTSDKQGSSSPNSASIEEIKHDNFDFGAVVVAPNKPAIDLSKILPPTWRKTYRRGRESLYSAETFEASKIIMSLSKGSLPCDKNKKGKQLIEFEDEKEKEEEHRYAKWIREECNYVKKMKRAWNGMNTHEASSSGVKDH 295
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi4400g00001 295 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Gabi4400g00001 295 MobiDBLite consensus disorder prediction 155 170 - -
Gabi4400g00001 295 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 96 294 - -
Gabi4400g00001 295 MobiDBLite consensus disorder prediction 149 170 - -
Gabi4400g00001 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 144 IPR013087 -
Gabi4400g00001 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Gabi4400g00001 295 MobiDBLite consensus disorder prediction 1 65 - -
Gabi4400g00001 295 SUPERFAMILY beta-beta-alpha zinc fingers 68 144 IPR036236 -
Gabi4400g00001 295 Pfam C2H2-type zinc finger 122 146 - -
Gabi4400g00001 295 Pfam C2H2-type zinc finger 69 93 - -
Gabi4400g00001 295 ProSitePatterns Zinc finger C2H2 type domain signature. 123 144 IPR013087 -
Gabi4400g00001 295 Gene3D Classic Zinc Finger 66 144 - -
Gabi4400g00001 295 SMART c2h2final6 122 144 IPR013087 -
Gabi4400g00001 295 SMART c2h2final6 69 91 IPR013087 -
Gabi4400g00001 295 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi4400g00001 Gabi-Chr4400 223 1202 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4400g00001 69 155 C2H2 Transcription Factor Family AT2G26940 36.937 1.76e-14 70.5
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4400g00001 zf-C2H2_6 4.9e-07 CL0361