Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi43g00001 ATGCAGCTAGGAGACTCAAGTGTGTTGGAAATCTCCTCCCCTAACAAGCCCGTGATGGCGGTGACGGCGGCAGCACCATCGGAAGCACCGGCACATGAAGATGTCAACGGTGGTGATATGGTAGAGATGGAAGTGAGTGCAAATTCAGGTGAAGAGAAGAGAAGAGAAGAAGGTGATAAGGTAAGGTTTGGAGGAAACCGTTGGCCACGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCTGATATGGATGCTGTGTTTCGGGATTCAAGTCTTAAAGGTCCACTTTGGGAAGAAGTTTCAAGGAAACTAGCAGAGCTTGGATATCACCGAAGCGCAAAGAAGTGCAAGGAAAAATTTGAGAATGTGTACAAGTACAACAAGAGAACCAAAGAAAGCAGAAGTGGAAAATCAGATGGAAAAACCTATAGGTTTTTTGATCAATTACAAGCCCTTGAGAACCAATTCAAAGTTTCTTACTCACCAAAATCACATCCTGTTTTGGCAAAAACAAATACACTAGCAGTGACATTGCCAACAAGGCAAAGTGATAACAGTACTATACCTATCTCTTATGTCACCACCACTTTTCCATCAACAAACCCTACACTTATTTCTCCTTCACCACCAACCACCACAACCAGATCCACAACAATAACCAACCCTAAAAATCCATCACCACAAGCCAATAATAATACCCCACATTATTCTTTCCACAACATGAACCTTTTCTCAACCATAACCTCTTCTTCCACCGCATCCGATGAAGACATAGAAGAGAGGTATAAGAGGAAGAGAAAATGGAAGGGCTACTTCAGGAGGCTCACTAGGCAGGTCCTGTCAAAGCAAGAGGAAACGCAGAAGAAGTTCTTGGAAGCCATTGACAAACGCGAGAGAGAATGGTTGACACAACAAGAAGCTTGGAGGATGCAAGAAATTGCGAGGATCAATAGGGAACATGAGTTCCTTGTTCAAGAACGATCAAATACAGCAGCCAAAGATTCAGCAATCATTGCATTGTTACAAAAATTGTCCGGGCAAAAAAATCCCACACAACCTCCTCGTAGCAATTCCCTCCTACAACAACCACCACCACAACCGTCGCCGTCGCAGTCACCGCGGCAAGTATCACAAATAGAGCAACAACAACAGCAGCCACAGCCATTATCATTGATACCAAACAACAAATTTGAAATCCAGATAATGAACAATGGTTACAATGCTACTACTCAAGTGAACTCTTCTTCTAGGTGGCCAAAGGCTGAAATTCATGCTCTAATAAGGTTGAGGACAAGTCTTGAAGCTAAGTATGAAGAAAATGGACCAAAAGCTCCATTGTGGGAAGATATATCAGCTGGGATGTTGAGACTTGGGTATAACAGGAGTGCAAAGAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGTAATAAAGAAAGGCGTGAGGATAGTAAAACATGTCCATATTTTCACGAGCTTGATGCTATATACAAAGAAAAGAGCAAATCTCAGAACCCCTTTAGCATCGCAATTCATATGAAACCAAATGAGTTGACGGAGCCATTGATGGTTCAACCAGAACAGCAATGGAGGCCCCCTCTTGAAGCTGGTATAGCGAAGGAGAATGCAAGTCAGTATCAAGAAAATGAAAAAGAAGAAGAAGAAGAGGATGATGTTGATGAAGATGAAAATGGAGCACGTAGTGTGGAAGAAGGAGGAGCTAGCGGTTATGATATTGTGACAAATAAGCTTTCTTCAATGGGCACAGTTGAATGA 1797 0.424 MQLGDSSVLEISSPNKPVMAVTAAAPSEAPAHEDVNGGDMVEMEVSANSGEEKRREEGDKVRFGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYNKRTKESRSGKSDGKTYRFFDQLQALENQFKVSYSPKSHPVLAKTNTLAVTLPTRQSDNSTIPISYVTTTFPSTNPTLISPSPPTTTTRSTTITNPKNPSPQANNNTPHYSFHNMNLFSTITSSSTASDEDIEERYKRKRKWKGYFRRLTRQVLSKQEETQKKFLEAIDKREREWLTQQEAWRMQEIARINREHEFLVQERSNTAAKDSAIIALLQKLSGQKNPTQPPRSNSLLQQPPPQPSPSQSPRQVSQIEQQQQQPQPLSLIPNNKFEIQIMNNGYNATTQVNSSSRWPKAEIHALIRLRTSLEAKYEENGPKAPLWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESNKERREDSKTCPYFHELDAIYKEKSKSQNPFSIAIHMKPNELTEPLMVQPEQQWRPPLEAGIAKENASQYQENEKEEEEEDDVDEDENGARSVEEGGASGYDIVTNKLSSMGTVE 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi43g00001 598 MobiDBLite consensus disorder prediction 201 229 - -
Gabi43g00001 598 MobiDBLite consensus disorder prediction 541 598 - -
Gabi43g00001 598 ProSiteProfiles Myb-like domain profile. 416 474 IPR001005 -
Gabi43g00001 598 Pfam Myb/SANT-like DNA-binding domain 66 152 IPR044822 -
Gabi43g00001 598 Pfam Myb/SANT-like DNA-binding domain 416 503 IPR044822 -
Gabi43g00001 598 MobiDBLite consensus disorder prediction 46 65 - -
Gabi43g00001 598 MobiDBLite consensus disorder prediction 346 390 - -
Gabi43g00001 598 MobiDBLite consensus disorder prediction 555 572 - -
Gabi43g00001 598 CDD GT1 416 481 - -
Gabi43g00001 598 ProSiteProfiles Myb-like domain profile. 66 124 IPR001005 -
Gabi43g00001 598 SMART sant 414 476 IPR001005 -
Gabi43g00001 598 SMART sant 64 126 IPR001005 -
Gabi43g00001 598 MobiDBLite consensus disorder prediction 357 371 - -
Gabi43g00001 598 MobiDBLite consensus disorder prediction 1 65 - -
Gabi43g00001 598 FunFam Trihelix transcription factor GT-2 418 479 - -
Gabi43g00001 598 CDD GT1 66 131 - -
Gabi43g00001 598 PANTHER FI21293P1 24 561 - -
Gabi43g00001 598 MobiDBLite consensus disorder prediction 372 390 - -
Gabi43g00001 598 FunFam Trihelix transcription factor GT-2 68 129 - -
Gabi43g00001 598 Gene3D - 418 479 - -
Gabi43g00001 598 Gene3D - 68 129 - -
Gabi43g00001 598 Coils Coil 543 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi43g00001 Gabi-Chr43 86663 89316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi43g00001 58 536 Trihelix Transcription Factor Family AT1G76890 46.931 7.54e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi43g00001 Myb_DNA-bind_4 2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi43g00001 - - gmx:100776819 674.47