Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4397g00002 ATGATATGCAATTGCTTTGGTGCCTTGAATTGTTGTAAAGGGAAGGGTGAGCCTGCTGGGCAGCCACATGAACAAGTGATTGCAACTACAAGGTTTAGCTATAACTCGTTGAGATCAGCAACGGGAGATTTTCATCCTTCAAGCAAAATTGGTGGAGGAGGTTATGGAGTTGTCTACAGGGGAGTTTTAAGGAATGGAACTCAAGTTGCTATCAAGTCTCTTTCTGTACAGTCTAAACAAGGAACCCGTGAATTTATGACGGAAATAGACATGATATCAAATATACGACATCCAAATCTTGTGGAACTAATTGGCTGCTGTGTTGAGGATAGTCATCGAATATTGGTTTATGAATTTCTGGAGAACAATAGCCTTGCGAGTACTTTGCTTGGTTCCAAAAGGAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGCCTTGGTACAGCTTCCGGTCTTGGATTTCTTCATGAAGAGGCTAAACCAAACATTGTTCACAGAGATATCAAGGCCAGCAACATATTGCTGGATGAGAACTTTAGTCCAAAAATTGGGGATTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCCGGAACTGTGGGATATCTTGCTCCAGAATATGCACTTCTAGGACAGCTTACGAAGAAGGCAGATGTATACAGTTTTGGGATAGTCATGCTTGAAATAATCAGTGGTACAAGTAGTAGCAAAGCTGCATTTGAAGAGAATCTTTTGGTTCTTGTGGAATGGGCTTGGAAGCTGAAAGCAGAAAATAGGCTTCTGGAAATTGTTGATCCAGAACTAACTGAATATGACGAGAACGAGGTGTATCGGTTCCTTGTAGTTGCTTTATTTTGCACCCAAGCAGCTGCTCAGCATAGACCAACCATGAAGCAAGTATTGGAAATGCTTTCAAAGGAAGTTCATCTGAATGAGAAAGCATTGACTGAGCCTGGAATATACAGATGGCATAGCTCTGGAAAGCGAGGTTCTTTGGATGAGACATCATCTTCTCAGGTAAACAAGTACAACAAATCTGAAAATCCACAAGTAACCTCAACCCACTATAGTGGTACAGATATTGTGACAGAGATGATTCCCCGATGA 1137 0.4151 MICNCFGALNCCKGKGEPAGQPHEQVIATTRFSYNSLRSATGDFHPSSKIGGGGYGVVYRGVLRNGTQVAIKSLSVQSKQGTREFMTEIDMISNIRHPNLVELIGCCVEDSHRILVYEFLENNSLASTLLGSKRKYVALDWPKRAAICLGTASGLGFLHEEAKPNIVHRDIKASNILLDENFSPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGIVMLEIISGTSSSKAAFEENLLVLVEWAWKLKAENRLLEIVDPELTEYDENEVYRFLVVALFCTQAAAQHRPTMKQVLEMLSKEVHLNEKALTEPGIYRWHSSGKRGSLDETSSSQVNKYNKSENPQVTSTHYSGTDIVTEMIPR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4397g00002 378 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Gabi4397g00002 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Gabi4397g00002 378 FunFam cold-responsive protein kinase 1 16 119 - -
Gabi4397g00002 378 FunFam Putative LRR receptor-like serine/threonine-protein kinase 120 326 - -
Gabi4397g00002 378 MobiDBLite consensus disorder prediction 340 370 - -
Gabi4397g00002 378 CDD STKc_IRAK 63 316 - -
Gabi4397g00002 378 Gene3D Transferase(Phosphotransferase) domain 1 120 328 - -
Gabi4397g00002 378 Gene3D Phosphorylase Kinase; domain 1 16 119 - -
Gabi4397g00002 378 Pfam Protein tyrosine and serine/threonine kinase 47 314 IPR001245 GO:0004672|GO:0006468
Gabi4397g00002 378 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4397g00002 378 SUPERFAMILY Protein kinase-like (PK-like) 22 314 IPR011009 -
Gabi4397g00002 378 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 353 - -
Gabi4397g00002 378 SMART serkin_6 44 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4397g00002 378 MobiDBLite consensus disorder prediction 336 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4397g00002 Gabi-Chr4397 64336 72496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4397g00002 32 363 Receptor kinase-like Gene Family AT1G56120 49.398 1.50e-105 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4397g00002 PK_Tyr_Ser-Thr 9.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4397g00002 - - gmx:100816683 635.18