Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4397g00001 ATGATATGCAATTGCTTTGGTGCCTTGAATTGTTGTAAAGGGAAGGGTGAGCCTGCTGGGCAGCCACATGAACAAGTGATTGCAACTACAAGGTTTAGCTATAACTCGTTGAGATCAGCAACGGGAGATTTTCATCCTTCAAGCAAAATTGGTGGAGGAGGTTATGGAGTTGTCTACAGGGGAGTTTTAAGGAATGGAACTCAAGTTGCTATCAAGTCTCTTTCTGTACAGTCTAAACAAGGAACCCGTGAATTTATGACGGAAATAGACATGATATCAAATATACGACATCCAAATCTTGTGGAACTAATTGGCTGCTGTGTTGAGGATAGTCATCGAATATTGGTTTATGAATTTCTGGAGAACAATAGCCTTGCGAGTACTTTGCTTGGTTCCAAAAGGAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGCCTTGGTACAGCTTCCGGTCTTGGATTTCTTCATGAAGAGGCTAAACCAAACATTGTTCACAGAGATATCAAGGCCAGCAACATATTGCTGGATGAGAACTTTAGTCCAAAAATTGGGGATTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCCGGAACTGTGGGATATCTTGCTCCAGAATATGCACTTCTAGGACAGCTTACGAAGAAGGCAGATGTATACAGTTTTGGGATAGTCATGCTTGAAATAATCAGTGGTACAAGTAGTAGCAAAGCTGCATTTGAAGAGAATCTTTTGGTTCTTGTGGAATGGGCTTGGAAGCTGAAAGCAGAAAATAGGCTTCTGGAAATTGTTGATCCAGAACTAACTGAATATGACGAGAACGAGGTGTATCGGTTCCTTGTAGTTGCTTTATTTTGCACCCAAGCAGCTGCTCAGCATAGACCAACCATGAAGCAAGTATTGGAAATGCTTTCAAAGGAAGTTCATCTGAATGAGAAAGCATTGACTGAGCCTGGAATATACAGATGGCATAGCTCTGGAAAGCGAGGTTCTTTGGATGAGACATCATCTTCTCAGGCTCAAGGTTTATAA 1062 0.4162 MICNCFGALNCCKGKGEPAGQPHEQVIATTRFSYNSLRSATGDFHPSSKIGGGGYGVVYRGVLRNGTQVAIKSLSVQSKQGTREFMTEIDMISNIRHPNLVELIGCCVEDSHRILVYEFLENNSLASTLLGSKRKYVALDWPKRAAICLGTASGLGFLHEEAKPNIVHRDIKASNILLDENFSPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGIVMLEIISGTSSSKAAFEENLLVLVEWAWKLKAENRLLEIVDPELTEYDENEVYRFLVVALFCTQAAAQHRPTMKQVLEMLSKEVHLNEKALTEPGIYRWHSSGKRGSLDETSSSQAQGL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4397g00001 353 Pfam Protein tyrosine and serine/threonine kinase 47 314 IPR001245 GO:0004672|GO:0006468
Gabi4397g00001 353 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Gabi4397g00001 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Gabi4397g00001 353 SUPERFAMILY Protein kinase-like (PK-like) 22 314 IPR011009 -
Gabi4397g00001 353 FunFam Putative LRR receptor-like serine/threonine-protein kinase 120 326 - -
Gabi4397g00001 353 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 338 - -
Gabi4397g00001 353 CDD STKc_IRAK 63 316 - -
Gabi4397g00001 353 Gene3D Phosphorylase Kinase; domain 1 16 119 - -
Gabi4397g00001 353 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4397g00001 353 SMART serkin_6 44 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4397g00001 353 FunFam cold-responsive protein kinase 1 16 119 - -
Gabi4397g00001 353 Gene3D Transferase(Phosphotransferase) domain 1 120 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4397g00001 Gabi-Chr4397 64336 73160 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4397g00001 32 329 Receptor kinase-like Gene Family AT1G56120 53.020 3.83e-105 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4397g00001 PK_Tyr_Ser-Thr 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4397g00001 - - gmx:100816683 599.356