Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4394g00002 ATGGCGGAACGTTCCATAGCAGAAGAAGGAGGAGGAGGAGGAGGAACATTCTCGTCATCGAAAAACGACAATGTCGTATTCCTCAACGGCAATCCCATTCTCTGTCCCCATCCCCTTACGGTGGTCCGCTCCCTCACCAGCACCGGCGGTGCCCGTGTTGTGGCGGCGCCTCCGGACCCGAACGAGTTCGACGCATCCAAAATGCCGATGATCAAGGTGAAGGAGGAGCCTCAGGAAGAAGAAGAAGAAGAAGGAAGCGGCAAAACGGGCTTCGAAGGTTCTCAACCCTTGAGATCGAAACCAGAACCGGTTTCTGAAGTGAAGCCTCCCGGTTCGTTTAAAGAAGAAGAAGGAACCGGCGAAACGGGCTCCGAAGGTTCTCAACCCTTGAGATCGAAACCAGAACCGGTTACTGAAGTGAAGCCACCCGGTTCGTTTAAAGAAGAAGAAGGAACCGGCGAAACGGGCTTCGAAGGTTCTCAACCCTTGAGATCGGAACCGGAAGTGGTTTCTGAAGTGAAGCCACCCTGTTCGTTTGAAGAATTTTGCAAGAAGAAAGAAGAACCATTGAATCAAACGAGTCAAGAAGTTTTTGATGTTGATAAGGTTGGTGTTAATAGAAATGAAGTGGAGATGCTTAAGGTGAATAATTCTCACAAGTTGTTGGAGAAGAATGTGGTGAAGAAGAAGCTGTTTGAAGAGAAGGAGAAGATCTTGAACGTTGAGGATGGCGAGTTTCCTGAAGAACCCGGGTGGTTGTTGTTGGAAAGGAAGGTTGAGGTTGCGCTCTCGACAGCCAAAGGAGTAAGAAGATTGGTGGATAATGAGATTGTTCATTTCAATTTCCCTCTCTCAAATTCATCGTACAAGTCCCAATGGATTGTTCGCATCTCAACCAAGCGTTCCGGAGAGGTTGGGAGGATGCAAATGGAATGGGCAAAAACTGTCACTCCGCTTGTGAAATCTGGAAAGGTCAAGGTTCGAGGCAGATGCATTGCAGCACCGGATAGCCTGCAAATGATGCAAGAAATCATGTTGTTTGTGAGCTTTTACATTCACCACTCTATATTCTCGGAGAGTGTTGATACTTCTTGGAGGCTAGAGGGTTGTGGTAACATTAACGCTACCATTTGTCCACTCCTTACACTGTTGAGAATGCTAGAGATTGAGCCATATCAGAAGGCTGAATTCACCCCTGAGGATATAGATTCTCGAAAGCGGTTGCTTAATCCAAATGTTGATTCAGTTGAAGCTGCAGCATTGCCTATGATCAAGCGAAGAAAGGGTGGCGAACAGCTGGGAAGCAAACAGCTTCCGGAGCAAAATGAGGATGAACAAGCTCTTTCCGAGTCAGCTTTGAATAAGCTTGTTGGAGCTGCAGAAATCTATGACCTGGAGGAGAAGGAAGCTCCAAGCACACTGATGTGTAAACTAAAACCTTACCAGAACCAAGCTCTCTATTGGATGTCGGAAATTGAGAATGGAATTGATGCAGAGAGTACTGAGAGAAATTTGCATCCTTGCTGGTCAGCCTACAAGATATGCAAGGGAAGGACAATTTATGCGAACATTTTCACGGGAGAAGCAACAAAGAATTTTCCAAAAGCAACACAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACTGTTATGACAATCTCTCTGATTCTCAGTAACCCAGGCAGGGGGAACTCAGAAAACAGGGATGTAGAGAGTGCAAAAGATAATATTATCACAAACAAGAGGAAGAATGTTGACACATCATATAAAGTAGACGGTGGCACCTTAATTGTTTGTCCCATGGCGTTGTTAAGTCAGTGGAAGGATGAGCTTGAAACCCATTCAAAACCAGGTACTATATCCATATTTGTTCATTATGGTGGGGGTAGAACCAATAATCCCGAGTTGATCTCAGAGCATGATGTTGTCTTAACAACATATGGTGTCCTATCAGCTGCATACAAAAGTGACGGAGAGAATAGCATCTACCACAGGGTCCAATGGTACAGGGTGGTGCTAGACGAAGCTCATTTTATAAAAGCCTATAGAAGCCAGGTTGCCCAGGCTGCTTTTACTTTATCCTCACACTGCCGCTGGTGTCTAACTGGAACCCCGCTTCAGAATAGCTTGGAAGACCTATTCAGTCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGTAACTGGCAATGGTGGAGTAAGTTGATTCAAAGGCCTTATGAGAATGGTGATCCAAGAGCCCTAAAATTGGTGAAGGCCATATTGAGGACACTGATGTTAAGAAGAACAAAGGAAACAAAGGACAAAGAAGGAAGGCCCATACTTGTTCTGCCACCTGCTGATATTCAACTGATTGAGTGTGAACAGTCAGAATCAGAACGGGACTTCTATGATGCCCTCTTCACGAGATCTAAAGTTCAATTTGATCAGTATGTTGCACAAGGAAACGTTCTTCACCACTATGCAAATATCCTTGACTTACTAATGCAGCTGAGACGGTGTTGTAACCATCCATTTTTGGTTATGTGCCAAAGTGATCCACAGCAATATGCAGAGTTGAACAAACTAGCAAGTAAATGCCTTCTAAATTCTGAATCTGCTTCGCACTCTATCCAATCCCGTGCATACATTGAGGAGGTTTTGGAGGATATTCAGAAGGGTGAAACAGTAGAATGCTCTATATGTATGGAATCACCAGATGATCCTGTGTTTACATCATGCGCACATAGGTTTTGTAGAGAATGCCTATTCAGTTGCTGGGGGACCTCATTGGGTGGTAAATGTCCAATCTGTCGTCAATCACTTAAGAAAAGTGATCTGATTGCTTGTCCATCCGAAAGCCCTTTCAAGGTTGATGTTGAGAACAACTTGACAGAGTCTTCAAAGGTTTCAAAGCTGATGGATTACTTACAACACATTCAGAATTCATCCTCTGGGGAAAAGAGTATTGTCTTCAGTCAGTGGACTTCATTTTTTGATCTAGTGGAGAATCCATTGCGGAGAAGAGGAATTGGTTTTTTAAGATTTGATGGGAAATTGTCTCAGAAACAGAGGGAGAAAGTTCTGAATGAATTTAATGAGACAAAAGAAAAAAGGGTTATGTTGATGTCACTGAGAGCTGGAGGTGTGGGCTTGAACTTAACTGCAGCCTCACATGTTTTCATTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGTATAGGACAGAAGCGAAGAGTTATTGTTAAGAGATTCATCGTGAAGGGCACAGTGGAAGATCGATTGCAACAAGTGCAAGCCAAGAAACAGAGGCTAATATCTGGTGCCCTCACTGATGATGAGGTTCGGTCTGCTAGGATTCAAGACCTCAAAATGCTATTCACGAGATAA 3405 0.4429 MAERSIAEEGGGGGGTFSSSKNDNVVFLNGNPILCPHPLTVVRSLTSTGGARVVAAPPDPNEFDASKMPMIKVKEEPQEEEEEEGSGKTGFEGSQPLRSKPEPVSEVKPPGSFKEEEGTGETGSEGSQPLRSKPEPVTEVKPPGSFKEEEGTGETGFEGSQPLRSEPEVVSEVKPPCSFEEFCKKKEEPLNQTSQEVFDVDKVGVNRNEVEMLKVNNSHKLLEKNVVKKKLFEEKEKILNVEDGEFPEEPGWLLLERKVEVALSTAKGVRRLVDNEIVHFNFPLSNSSYKSQWIVRISTKRSGEVGRMQMEWAKTVTPLVKSGKVKVRGRCIAAPDSLQMMQEIMLFVSFYIHHSIFSESVDTSWRLEGCGNINATICPLLTLLRMLEIEPYQKAEFTPEDIDSRKRLLNPNVDSVEAAALPMIKRRKGGEQLGSKQLPEQNEDEQALSESALNKLVGAAEIYDLEEKEAPSTLMCKLKPYQNQALYWMSEIENGIDAESTERNLHPCWSAYKICKGRTIYANIFTGEATKNFPKATQMARGGILADAMGLGKTVMTISLILSNPGRGNSENRDVESAKDNIITNKRKNVDTSYKVDGGTLIVCPMALLSQWKDELETHSKPGTISIFVHYGGGRTNNPELISEHDVVLTTYGVLSAAYKSDGENSIYHRVQWYRVVLDEAHFIKAYRSQVAQAAFTLSSHCRWCLTGTPLQNSLEDLFSLLCFLRVEPWCNWQWWSKLIQRPYENGDPRALKLVKAILRTLMLRRTKETKDKEGRPILVLPPADIQLIECEQSESERDFYDALFTRSKVQFDQYVAQGNVLHHYANILDLLMQLRRCCNHPFLVMCQSDPQQYAELNKLASKCLLNSESASHSIQSRAYIEEVLEDIQKGETVECSICMESPDDPVFTSCAHRFCRECLFSCWGTSLGGKCPICRQSLKKSDLIACPSESPFKVDVENNLTESSKVSKLMDYLQHIQNSSSGEKSIVFSQWTSFFDLVENPLRRRGIGFLRFDGKLSQKQREKVLNEFNETKEKRVMLMSLRAGGVGLNLTAASHVFIMDPWWNPAVEEQAIMRIHRIGQKRRVIVKRFIVKGTVEDRLQQVQAKKQRLISGALTDDEVRSARIQDLKMLFTR 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4394g00002 1134 ProSiteProfiles Zinc finger RING-type profile. 896 936 IPR001841 -
Gabi4394g00002 1134 SUPERFAMILY RING/U-box 891 945 - -
Gabi4394g00002 1134 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 247 1133 - -
Gabi4394g00002 1134 Pfam SNF2-related domain 481 844 IPR000330 GO:0005524|GO:0140658
Gabi4394g00002 1134 Pfam Helicase conserved C-terminal domain 968 1080 IPR001650 -
Gabi4394g00002 1134 Pfam Zinc finger, C3HC4 type (RING finger) 894 941 - -
Gabi4394g00002 1134 Gene3D - 782 1134 IPR027417 -
Gabi4394g00002 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 766 IPR027417 -
Gabi4394g00002 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 779 1129 IPR027417 -
Gabi4394g00002 1134 SMART ultradead3 474 745 IPR014001 -
Gabi4394g00002 1134 CDD RING-HC 895 935 - -
Gabi4394g00002 1134 CDD DEXDc_SHPRH-like 478 766 - -
Gabi4394g00002 1134 SMART ring_2 896 935 IPR001841 -
Gabi4394g00002 1134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 888 944 IPR013083 -
Gabi4394g00002 1134 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 969 1134 IPR001650 -
Gabi4394g00002 1134 MobiDBLite consensus disorder prediction 52 171 - -
Gabi4394g00002 1134 Gene3D - 528 767 IPR038718 -
Gabi4394g00002 1134 MobiDBLite consensus disorder prediction 1 22 - -
Gabi4394g00002 1134 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 728 IPR014001 -
Gabi4394g00002 1134 SMART helicmild6 997 1080 IPR001650 -
Gabi4394g00002 1134 SMART HIRAN_2 255 352 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gabi4394g00002 1134 FunFam DNA repair protein RAD5B 531 767 - -
Gabi4394g00002 1134 Pfam HIRAN domain 263 346 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gabi4394g00002 1134 ProSitePatterns Zinc finger RING-type signature. 911 920 IPR017907 -
Gabi4394g00002 1134 CDD SF2_C_SNF 952 1091 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4394g00002 Gabi-Chr4394 84831 90948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4394g00002 205 1132 RAD5 or RAD16-like Gene Family AT5G43530 63.966 0.0 1241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4394g00002 SNF2_N 1.4e-79 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4394g00002 K15505 - gmx:100806677 1484.93