Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4392g00005 ATGGAACAGAAGCGCGTCCTATTTTCAGCATTGAGTCTTGGGGTTGGGTTGGGTGTCGGGCTGGGATTGAGCGTGCAAAAATGGTTCGGAGGGTATATTGAATCTGATGAGATTTCTGAAGAGCAGATTGTGCACGAGCTCGAGAACCTGCTGAATGATGTGAAGGACTACACATGCACATTTGATGAGTTTCCTTATTACTTAAGTGACAAAACCCGAGTTTTGTTGACAAGTGCTGGAAATATTTATTTAAAACAAGACTTTAACAAGCACATGAGGAACCTTTCACCACCAAGCAGAGCTATTTTGCTTTCCGGACATGCAGAACTTTACCACCATATGCTTTCCGTAGCATTAGCACATAACTTTCAATCGAAGTTAATGTTGCTAGATATTACGGACTTCTCTTTAGAGATGCAGAGAAAATACGGATGTTCTAGAAAAGAACCATATTTTAAAATGTCCATATCTGAGGTGAACTTGGAACGAATGTCTGGTTCGTTTGGTTCTTCGTCAATCCTCCCTTCAACCGGCGAAACTAGAGGTACTCTAAGTAGGCAAAGTAGTCGAATTGAAAATTCCAATAATCCTCCAAAGCTTCGTAGGAATGCCTCTCCTGCATCTAATATGAGTAGCAATTCCCAACATGGTCAATCAGATCCACCTCCTTTGAACTGCACAAGCCGCATCTGTTTTGATGAAAAGCTCTTTATGCAGTCACTTTACAAGGTCTTGGTTTCTGTCTCAGAAACTGGTTCTATCATTTTATACATCAAGGAAGTTGACAAGCTCTTTGTTCGATTACCAAGAATGTACCATTTGCTCCAAAAGCTAATAAAGAAACTTTCAGGGACAGTGTTAATTCTCGGTTCCCGGGTCATTAATTCAGAAGATGATTGTAAAGAAGTTGATGAAAAGCTCACTTTGTTATTCCCTTACAACATTGAGATCATTCCACCTGAAGATGAGACTCACCTTGGCAACTGGAAAGCTCTACTAGAAGAGGACAAGAAAAGATTTTTGTTTCAATATACCAAAAACCACATTGCTGAAGTACTTGCAGCAAATGACATTGATTGTGATGAATTGAATACAATCTTCTTGTCTGACACTATGCTACTCAGTAATTATATTGAAGAGATTGTGTTATCTGCAATTACGTACCATTTGATGAGTACCGGATATCAAGAATACCGATATGGAAAGCTAGTTATATCAGCTCAGAGTTTGGCCCATGTATTGAGGTTGTTTCAGGAAGGCAACAGTAGCGGGACGGATATTATGAAGCCTAATGAATCAAACAAGAATGCTGCAGGAGAATATATTGCCAGTGCAAAAAAAGATGTGCCTGCAACAAAGAGATTCCGCGAGCATAATGCTCCTGCAAAAAAAGCTGAGTTTCCTCTTGACAATGAGTTTGAGAAGTGCATAAGACCAGAGGTCATAGCTGCAAATGAGATTGTAGTTACATTTGCAGATATTGGTGCATTGGATGATATTAAAGAATCACTTGAAGAAGTGGTCATGCTTCCCCTTAGAAGACCAGACCTATTCAAAGGTGGTCTTTTGAAGCCTTGTAAAGGTTTATTGCTTTTCGGACCGCCTGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAATCCGGAGCAAGTTTCATAAGCATCTCAATGTCCACCATCACTGCAAAATGGTTTGGAGGAGCTGAAAAGAATGTCCGAGCTTTGTTTACAGTGGCAGCAAAGGTTGCCCCAACTATTATTTTTATTGATGAGGTTGATAGCATGCTTGGGCAACGGACTAGAGCTGGAGAGAATGAGGCAATGAGAAGTATTACAAATGAATTCATGATCCACTGGGATGGGTTATTGACAAAACCTGGTGAGCAAATTTTGGTTCTTGCTGCAACCAATAGGCCATTTGATCTTGATGAAGCAATTATAAGGCGGTTTGAGCACAGGATCATGGTTGGTCTTCCATCTACTGAAAACAGGGAAATGATATTGAAAACTCTCCTGGCTAAGGAAAAACATGAAAATATAGACTTCAAAGAGCTTTCAACCATGACACAAGGATATAGTGGAAGTGATCTTAAGAATTTGTGCTCGACTGCTGCTTATCGACCAGTTAGGGAGCTAATACAGCAGGAGAGGTTGAAGGAAATGGAAAAGAAGAAAAAGGAGGCAAAAGTTCAAAGCTCAGAAGATGCTTCCAATGCTACAAAAAGTAAAGAAGACAAAGTGATTACCCTGAGGCCTATAAACATGGAAGATATGAGACAGGCAACGAATCAGGTGGCTGCAAGTTTTGATGCAGAAGGATCCACAATGAAGGAGCTGAAACAGTGGAATGATTTATATGGACAAGGAGGTTCAAGGGAGAATCAGCACCTAGATTATTTCTTTTAG 2412 0.4022 MEQKRVLFSALSLGVGLGVGLGLSVQKWFGGYIESDEISEEQIVHELENLLNDVKDYTCTFDEFPYYLSDKTRVLLTSAGNIYLKQDFNKHMRNLSPPSRAILLSGHAELYHHMLSVALAHNFQSKLMLLDITDFSLEMQRKYGCSRKEPYFKMSISEVNLERMSGSFGSSSILPSTGETRGTLSRQSSRIENSNNPPKLRRNASPASNMSSNSQHGQSDPPPLNCTSRICFDEKLFMQSLYKVLVSVSETGSIILYIKEVDKLFVRLPRMYHLLQKLIKKLSGTVLILGSRVINSEDDCKEVDEKLTLLFPYNIEIIPPEDETHLGNWKALLEEDKKRFLFQYTKNHIAEVLAANDIDCDELNTIFLSDTMLLSNYIEEIVLSAITYHLMSTGYQEYRYGKLVISAQSLAHVLRLFQEGNSSGTDIMKPNESNKNAAGEYIASAKKDVPATKRFREHNAPAKKAEFPLDNEFEKCIRPEVIAANEIVVTFADIGALDDIKESLEEVVMLPLRRPDLFKGGLLKPCKGLLLFGPPGTGKTMLAKAIANESGASFISISMSTITAKWFGGAEKNVRALFTVAAKVAPTIIFIDEVDSMLGQRTRAGENEAMRSITNEFMIHWDGLLTKPGEQILVLAATNRPFDLDEAIIRRFEHRIMVGLPSTENREMILKTLLAKEKHENIDFKELSTMTQGYSGSDLKNLCSTAAYRPVRELIQQERLKEMEKKKKEAKVQSSEDASNATKSKEDKVITLRPINMEDMRQATNQVAASFDAEGSTMKELKQWNDLYGQGGSRENQHLDYFF 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4392g00005 803 Coils Coil 713 733 - -
Gabi4392g00005 803 MobiDBLite consensus disorder prediction 170 223 - -
Gabi4392g00005 803 SMART AAA_5 525 662 IPR003593 GO:0016887
Gabi4392g00005 803 Pfam AAA+ lid domain 681 724 IPR041569 -
Gabi4392g00005 803 Gene3D - 661 743 - -
Gabi4392g00005 803 MobiDBLite consensus disorder prediction 725 748 - -
Gabi4392g00005 803 ProSitePatterns AAA-protein family signature. 632 651 IPR003960 GO:0005524|GO:0016887
Gabi4392g00005 803 Pfam ATPase family associated with various cellular activities (AAA) 529 659 IPR003959 GO:0005524|GO:0016887
Gabi4392g00005 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 774 IPR027417 -
Gabi4392g00005 803 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 801 - -
Gabi4392g00005 803 Gene3D - 489 745 IPR027417 -
Gabi4392g00005 803 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 488 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4392g00005 Gabi-Chr4392 96466 106797 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4392g00005 477 766 Calmodulin-binding Proteins AT3G56690 33.333 8.87e-43 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4392g00005 - - gmx:100817952 1056.59