Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4385g00001 ATGGCCGAGCAGCACCACAACAACTTGGAAGCTGTTCCACTGGAACGAAATGAAAAAGCTGAAGAGGAAGAAGAGTTGCAGTCACGAGTCACTAACTCACCGCATGCCACCGAGTTACGCATTTCCAGTCCTCACGATGAAGCGCAACCCAATTTAGAAACCCTAGTCGTTCCCTCTTCGCTTCCGCACGATCACCCTCCTCATGTGCAGAGAAGCTTCATCACTCATAAGGGTAACGAAGCCGAAAGTAAGGAGTCAATTGGGCCTCCCGACAAGGAAATTATTGTAAAAGACATAGTTGAGGCACCTCAAACACAGACAGAAAATCAACTTCAGGTGTCTGTGTGTACAACTCCGTGGTCTGAACTATCACCAACTTCTGCTACTCAATATTCATCGCCTGCTCCTAGTCCAACTGTACCAGAACAGAGACTGTCTCGTCCAAAGGTTAATAGTGTACATGTGCGGCAAGCAGACAAAAAAACTCGTGGTGGTAAAATCTTATCTTCTGTTTCTGTTGCAAGGGCTTCTGCATCTGATGGATACAAATGGCGCAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTAGAAGCTATTACAGGTGCACTCATTCTGATTGTTATGCTAAAAAGATTGAATGCTGTGACCATTCAGGTCATGTGAAAGATATTGTTTATAGAAGTCCACACAGTCATGATCCCCCGCATAAGACTTATTCCACTAGGGAAAGTAAGTTCATGCCTTCCAATGAACCTAGTGTAGAAAACACCGTTCCGGAGCAGCCTATCAGAATTCTAAATGATTCTGATGCTTCACTTTCTCCTAAAGAACCTCTACAGGAAGAACCTTGCCATGCTGATAAGAAACGACAAAACTCATCTAACGGTGAGAATGGTAGTGTTATTTTGAAGGAGGAGCATGTTAATGAGCCAGAGCTGAAAAGAAGAACAAAGAAAGGTGATTTAACATGCTTGGATTCACCAGTAAAACCTGGAAAGAAACCAAAGTTCGTTGTACATGCAGCAGGAGATGTGGGGATATCAGGTGATGGATACCGATGGCGCAAGTATGGACAAAAAATGGTGAAGGGGAATCCTCATCCCAGAAACTACTACAGATGCACTTCTGCTGGATGTGCAGTCCGAAAGCACATTGAGACTGCTGTGGATAACTCAAATACTGTCATCATAACATACAAGGGAGTACATGACCATGACATGCCTGTGCCCAAGAAACGACATGGCCCGCCAAGTGCTCCGCTCATAGCTGCTGCAGCACCTGCTTCAATGAGCAATTTGCAGTTTAAGAAAACAGACTCCCCGCAAAAGCGAAAAACTTCTACCCAATGGTCGGTGGACACACAAGGAGAATTAACTGGGGAAACCTTGGACCTTGGCGGTGAGAAAGCAATGGAGTCAGCTCAGACTCTTCTTAGCATAGGTTTTGAAATTAAACCTTGCTGA 1470 0.4483 MAEQHHNNLEAVPLERNEKAEEEEELQSRVTNSPHATELRISSPHDEAQPNLETLVVPSSLPHDHPPHVQRSFITHKGNEAESKESIGPPDKEIIVKDIVEAPQTQTENQLQVSVCTTPWSELSPTSATQYSSPAPSPTVPEQRLSRPKVNSVHVRQADKKTRGGKILSSVSVARASASDGYKWRKYGQKQVKSPTGSRSYYRCTHSDCYAKKIECCDHSGHVKDIVYRSPHSHDPPHKTYSTRESKFMPSNEPSVENTVPEQPIRILNDSDASLSPKEPLQEEPCHADKKRQNSSNGENGSVILKEEHVNEPELKRRTKKGDLTCLDSPVKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCAVRKHIETAVDNSNTVIITYKGVHDHDMPVPKKRHGPPSAPLIAAAAPASMSNLQFKKTDSPQKRKTSTQWSVDTQGELTGETLDLGGEKAMESAQTLLSIGFEIKPC 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4385g00001 489 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 125 441 IPR044810 GO:0003700
Gabi4385g00001 489 MobiDBLite consensus disorder prediction 1 29 - -
Gabi4385g00001 489 SUPERFAMILY WRKY DNA-binding domain 346 410 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi4385g00001 489 Gene3D WRKY domain 335 411 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi4385g00001 489 Gene3D WRKY domain 165 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi4385g00001 489 MobiDBLite consensus disorder prediction 1 51 - -
Gabi4385g00001 489 SUPERFAMILY WRKY DNA-binding domain 176 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi4385g00001 489 FunFam WRKY transcription factor 337 411 - -
Gabi4385g00001 489 SMART WRKY_cls 350 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi4385g00001 489 SMART WRKY_cls 178 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi4385g00001 489 MobiDBLite consensus disorder prediction 244 265 - -
Gabi4385g00001 489 MobiDBLite consensus disorder prediction 123 146 - -
Gabi4385g00001 489 MobiDBLite consensus disorder prediction 228 242 - -
Gabi4385g00001 489 MobiDBLite consensus disorder prediction 228 311 - -
Gabi4385g00001 489 MobiDBLite consensus disorder prediction 123 164 - -
Gabi4385g00001 489 Pfam WRKY DNA -binding domain 180 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi4385g00001 489 Pfam WRKY DNA -binding domain 352 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi4385g00001 489 ProSiteProfiles WRKY domain profile. 345 410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi4385g00001 489 ProSiteProfiles WRKY domain profile. 173 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4385g00001 Gabi-Chr4385 22721 44411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4385g00001 92 489 WRKY Transcription Factor Family AT4G30935 53.155 1.01e-125 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi4385g00001 WRKY 5.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4385g00001 - - gmx:100127377 620.928