Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4380g00001 ATGGTTGATAACAACATTGGAGGTAGTTCCTCAAACGATTATGGTGTTATCAAGGAACAAGACCGGTTGCTGCCAATAGCCAATGTTGGTCGGATCATGAAGCAGATTTTGCCTCAGAATGCAAAAGTATCGAAGGAAGCAAAGGAAACAATGCAAGAATGTGTGTCAGAGTTCATAAGCTTTGTAACCAGTGAAGCTTCAGATAAGTGCAGGAAGGAAAGGAGAAAGACCGTGAATGGGGATGATATCTGCTGGGCCCTGACAGCGCTAGGTTTTGATGAATATGCAGACCCAATGAAAAGGTACTTGCATAGATATAGAGAATTAGAGGTAGATAAGGTCAATCAAGAAAGAGGAAATAGCCCTGAAGATAAAGATCGTACTGAACCAGAATCTTATGGGAGGTCGAGTTTATATTGA 420 0.4143 MVDNNIGGSSSNDYGVIKEQDRLLPIANVGRIMKQILPQNAKVSKEAKETMQECVSEFISFVTSEASDKCRKERRKTVNGDDICWALTALGFDEYADPMKRYLHRYRELEVDKVNQERGNSPEDKDRTEPESYGRSSLY 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4380g00001 139 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 117 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi4380g00001 139 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Gabi4380g00001 139 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Gabi4380g00001 139 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Gabi4380g00001 139 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Gabi4380g00001 139 Gene3D Histone, subunit A 15 136 IPR009072 GO:0046982
Gabi4380g00001 139 SUPERFAMILY Histone-fold 20 132 IPR009072 GO:0046982
Gabi4380g00001 139 MobiDBLite consensus disorder prediction 112 139 - -
Gabi4380g00001 139 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi4380g00001 139 FunFam Nuclear transcription factor Y subunit B-3 12 136 - -
Gabi4380g00001 139 MobiDBLite consensus disorder prediction 112 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4380g00001 Gabi-Chr4380 28514 33402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4380g00001 16 123 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.926 1.64e-58 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi4380g00001 CBFD_NFYB_HMF 2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4380g00001 K08065 - gmx:100794513 212.231