Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4374g00002 ATGAATATGCTTAGAGAGAATGAGCCCTTAACCCATAACCAGAAGAACTACTTTTATAACAATACTACTGTGTCCTCAGAGAACTCATTACCCTATAAATTCTCTTCACCGAAGCCACTTGTTGAGGTTGAGAGGTTTCCACCATCCCCGGACCCTACCATAGTAAAGAAGCTTAACCACAATGCCAGTGAACGTGATCGTCGCAAGAAGATCAAACGCTCGATTGCTTCACTTGGTTCGCTTCTTCCGGTGCCACATCAAACGAAAAAATTGAGCGTTCCGAACACAATTTCCTTAGTCGTAAAATACATACCTGAGTTACAACACGAGGTAGAAGGATTAAGTAAGAAAAAAGAGGAGCTTCTATCGAGGATTTCCCAGCAAGGAGATGCAGTGAAGAAACAATCTCAAAGGAAGATTTCCCAACTCAATTCTGTTTTTGTAGTTTCTGCAACTAGGCTCAACTTTAATGAGGCTGCTATTCAGATTTCATCGTATGAGGTTTACAGGACCCCACTATCTGAGATCTTGCTGTTTTTAGAGAATAATGGATTTTGTCTGCTAAGTGCTTCTTCCTCTGAAACCATTGGAGGGAGGGTCTTCTATAACTTGCATTTACAGCTTTCCCACTTTCTTGTTTCTACCTCTGTGGGGGCTCCTCTTATATCCTTAGATCAATCTCCCCTTATTATTCTTAGTGACTGTGCTTCCTCTTCTTCCATATCGGATTTAGATCTCGACAGGGCATCAAAGGCAGGGCCTTCAACTTCAGGAGTAGACGATTGCTTTGATTGGGAATTGTTGGAGATCCTTAATATGTGA 822 0.4173 MNMLRENEPLTHNQKNYFYNNTTVSSENSLPYKFSSPKPLVEVERFPPSPDPTIVKKLNHNASERDRRKKIKRSIASLGSLLPVPHQTKKLSVPNTISLVVKYIPELQHEVEGLSKKKEELLSRISQQGDAVKKQSQRKISQLNSVFVVSATRLNFNEAAIQISSYEVYRTPLSEILLFLENNGFCLLSASSSETIGGRVFYNLHLQLSHFLVSTSVGAPLISLDQSPLIILSDCASSSSISDLDLDRASKAGPSTSGVDDCFDWELLEILNM 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4374g00002 273 CDD bHLH_AtORG2_like 56 128 - -
Gabi4374g00002 273 SMART finulus 61 113 IPR011598 GO:0046983
Gabi4374g00002 273 FunFam Transcription factor ORG2 51 145 - -
Gabi4374g00002 273 Gene3D - 51 144 IPR036638 GO:0046983
Gabi4374g00002 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 126 IPR036638 GO:0046983
Gabi4374g00002 273 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 54 213 - -
Gabi4374g00002 273 Coils Coil 104 124 - -
Gabi4374g00002 273 Pfam Helix-loop-helix DNA-binding domain 56 108 IPR011598 GO:0046983
Gabi4374g00002 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 55 107 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4374g00002 Gabi-Chr4374 36323 42070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4374g00002 51 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 49.367 3.88e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4374g00002 HLH 3.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4374g00002 - - gmx:100803424 229.18