Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4373g00004 ATGGAGGGCGAGGCCGGTTCGGAGGGACACAATAGGGGTGGCGCAGATGATAACAGCAACGACAATAATGGAAGCAATAGCAAGATTGCGAATTCCAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAGACCCCCTTTCAGCTTCAAAATCTCGAGAAAGCTTATGCTTTGGATACTTATCCTTCGGAGGCGATGAGATTAGAGTTGTCGGAAAAGTTGGGGTTGTCGGATCGGCAACTGCAGACGTGGTTCTGTCATAGGAGGTTGAAGGACAAGAAGGACTTGCCTCCCAGGAAACGGCCGCGGAAGGTGGCAGCAGAGCCTTTGCCAGATTCCGACTTGCCTCCCAAGAAACGGCCGCGGAAGGTGGCAGCAGAGCTTTTGCCAGATTCCCCCACAGATGACATGAGGTTGGACCCTGAACTTGGCAATGAGTATGGATCCGGGTCGGGTTCGGGGTCCAGCCCGCTTACCCGTTCTGAGTCCCGGAATGCGATGCCCCAGGGCTTGCCGGGTTATTATGAGTCCCCTCAGGCTGGAATGGAGAGTAGAGCAATTGCTTCTGTGGAGGCACAGTTAGGGGAGCCGTTGAGGGAAGATGGACCCATTCTAGGAGTAGAGTTTGACCCATTGCCACCAGATGCATTTGGGGCACCCATAGTTACAGAACAGCGGAAGCGACCTAGTCTTGCCTATGACAGTAAAATATATGATAGGCATGATATGAGAGCAAATAAGGCTGAGAAATTGAGGCAAAAAGAAGAGCTTCGCAAAGAAAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCAACTGCCCGTAGAATGGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAATTGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATACGTCTTGATTTTGATACTTTGCAAAACCTTGAATCATATAAGGATTCATTGTGTGTTCTCCCACCCAAGAGTGTAAAGCTAAGAAAACCATTTGCTATACAACCCTGGATCAACTCTGAAGAGAATGTTGGTAACCTGCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGGCCTTTTACTCTCGATGAGTTTATGCAAGCATTTCACGACAATGATTCAAGACTGTTGGGTGAGATACATGTTGCTCTTCTTAAAGTGATAATAAAAGACATTGAGGATGTTGCAAGGACACCTTCTACAGGATTAGGAATGAATCAGAATGGTGCTGTTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGGTTTGACATACGAAATTGGCATAAGCACTTAAATCAGTTGACATGGCCGGAAATCTTCCGACAGCTAGCATTATCTGCAGGATATGGACCACAGTTGAAGAAAAGAAGTGTTACATGGTCCTATGAAAAAGATAAAGACGAGGGCAGAAGTTGCGAAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCCGAAAATGCAGTTGCAAAAATGCAGGAGAAAGGGCTATTAGCACCTCGAAGATCTAGGCATAGGTTAACTCCTGGAACAGTTAAGTTTGCAGCATTTCATGTTCTCTCGCTTGAGGGTAGCAAGGGATTGACAGTACTAGAGCTCGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACACCTGAGGCATCCATTTCTGTTGCTTTGACAAGAGATGCCAAGCTTTTTGAAAGAATAGCTCCATCAACGTATCGTGTTCGTTCTGCATTTAGAAAAGATCCTGCTGATGCTGAGTCCATTCTGTCTGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCAAGCTGGGGAAGATGCTGATGATGTTGCAAGAGAAGAAGAGTCTGAAAGTGACGAAGTTGATGAGGATCCTGAAGTTGATGACTTGGTAAATCCTTCAATTGCAAAAAAAACATCTGAACTGTGTGATGATTTATCATCAAATGGAAAAGAAAATTTGGTTAATGATGTAGAACTTCAAGATGAGTTTGATAAGGATATGCCTTGTTTTCCTGAGAATGGTTCAAAGAATACCGATTGTGCAAGTACTGCCACTGGACAACCTGTTGCTTGTGAAGATCTGAATGCTGGAAATCTTGGTGAAGATAATACGGAAATTGATGAAAGCAAGTCTGGAGAATCATGGGTTAAAGGGCTTGCAGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTGTTGGTTGGTGTGGCAAACGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCATCAAATGCACTGAAGAAGCAAATGTGGGCAGAAGCACAGACAGACAAAGTTCGTCTGAAAGATGATATTTTTAATAAATTAGATTTTGCATCTATGGGTGGCAATAAAGTTGAAACACAAGACACATGTCCTATTGTGGAGGGCCACCAAAGTCCATTGCTTGACATTAATATTGACGCTGATAATAATGAGGCATCACCCAGCACTGCAGAAAATCAAAAAGCAGCTCCTGTTGCACAGAGCCTGTCTGTTGAAAGGCCCTCTTCAGTTCAAGATCTCTGTACAGGTCCAGATAACCCTCAGGCTCAGCTATCTGCACAATATTCAAAAAGGTCACGATCCCAGTTGAAATCTTATATTTCCCACATAGCGGAGGAGACGTTTGTCTACAGATCCTTACCCCTTGGCCAAGATCGCCGACGTAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGATCCTGGCTCTGGCAGGATCTTTGTTGAATATCATGATGGAAATTGGAGGCTTATTGATTCTGAAGAGGCCTTCAATGCACTTTTGAATTCACTGGATTCACGTGGGATGAGGGAATCTCATTTGCGTTTGATGTTGCTGAAGATTGAAAATCCGTTTAAGGAAAATGTTCGAAAGAACACACTTAGCAACAAAATTGGAAGCAGAGATGAAGCTGATGAAACTGATTCCAGTCCTGATCTCCAGACTGGAACTGACACTCCTAGCAGTACTCTTTGTGGCTTGAACTCTGATGTTTCAGAAACTTCATCATCCTTCAAAATTGAGCTCGGGAAAAGTGAGAGCGAGAAGAAAGCTGCCTTGAGAAGGTATCAAGATTTCCAAAAATGGATGTGGAAAGAATGCTACTGCTCATCAATATTATGTGCAATGAAACATGGGAGAAAGAGAGGCAGCCCTCAGGTTGACATCTGTGATATCTGTCTCAACCCTTATTTCTTTGAAGACTCTCATTGCAATTGTTGCCACCGCACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGAGACAAGTTATCCAAAGATATTAGTAATTTAGATTCTTCTCTTCCCTTGCGGACAAGATTGTTTAAGGCTCTTCTTGCTTTTATTGAGGCATTTGTTCCACCTGAAGCATTTCAATCAATTTGGAAAGAAGATATTAGGAGGCATTGGGGTCTGAAGTTAAGCAAATCATCTTCTGCTGATGAACTTCTACAGATATTGACCCTACTTGAGAGAGCATTAAAGCGAGATTTTTTATCATCAACCTTCACTACAACAGAGGAACTGTTGCGGTCGAGCAGTATGTCAGAGAGTGCTGCACATACTTCTACTAATCCTGAATCAGTTGCTACACTTCCATGGGTTCCACAGACTACTGCAGCTGTGTTTCTTAGACTTTTTGAGTTGGATGGATCCATAATCTATGTACCGCGTGAGAAAACTGAGCTTCGTGAGGAGAAAGACTCTAGGGAGTGCATAAAGCTTCCTTCAAGATATAATCCCTCCAAATCTAGTAAAGTGGTTGAACCAGAACCAGCAGATTCGGACCATGATGATTTCATGAAAGTTAAATCTGCTCCTATGAAAATTGCACGGAGCAGCAATAAACGTGGACGAGGGAGTCATGATAAAGGACGGGGTAAAAAGCTATCTAAAAGAATGAGGGATTCTAAACGAGATACCAGCCGCAATGTTAAGGTCACTGAGAATCTAAGTCAGAGAATTAAACAGCAGGGACGAGGATCACAAGGACAAGCTGGTGGACGTGGTCGCCGGACAGTGAGGAAAAGGAGAGTGGAAAAAAGGGCTGTTGAAGATTTGTTGCTGGGCCATGGGGCTGCCTCTCATAGCTCCAGTATCGGTAGGGAACCATTGAGAAGCTTGGATGAGGATTGGGATGATAGAAAGGCAAGTCCCATGACTCCCATCCACATGGGGGCTGCCGACATCAGTAACAGTGCTGAAGAGGCTGAATCTGGTGATAATGCTCAAGCAGTGGAATCTGGTGATAATGCTCAAGCAGTGGAATCTGGTGATAATGCTCAAGCAGTGGAATCTGATGACAATGATGAAGCAGTGGAATATGATCAAGGAAACTGGGAGATTGGTTTTAGCGGTACCCCCAACAGATGGAGTAGGCATTTGGTTAATATGAGTGATGAAGATGTGGAAGCTTCTGAAGATGACAATGACAATGGCATTGAAGAGGAGGATTCAGAGGCAGATGTTATGAGCGAGGGTTCAGATGGTATGGCTAATGGAGTTGTAAATGGAGCAGGCTCAGACTCGGCTGATTCTGAAGATTAG 4680 0.4389 MEGEAGSEGHNRGGADDNSNDNNGSNSKIANSNEGQSKPKRQMKTPFQLQNLEKAYALDTYPSEAMRLELSEKLGLSDRQLQTWFCHRRLKDKKDLPPRKRPRKVAAEPLPDSDLPPKKRPRKVAAELLPDSPTDDMRLDPELGNEYGSGSGSGSSPLTRSESRNAMPQGLPGYYESPQAGMESRAIASVEAQLGEPLREDGPILGVEFDPLPPDAFGAPIVTEQRKRPSLAYDSKIYDRHDMRANKAEKLRQKEELRKEKEAERRKAALEKATARRMAKESMELIEDEQLELMELAASSKGFSSIIRLDFDTLQNLESYKDSLCVLPPKSVKLRKPFAIQPWINSEENVGNLLMVWRFLITFADVLELWPFTLDEFMQAFHDNDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAVNSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALSAGYGPQLKKRSVTWSYEKDKDEGRSCEDIISTLRNGSAAENAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRVRSAFRKDPADAESILSEARKKIQIFENGFQAGEDADDVAREEESESDEVDEDPEVDDLVNPSIAKKTSELCDDLSSNGKENLVNDVELQDEFDKDMPCFPENGSKNTDCASTATGQPVACEDLNAGNLGEDNTEIDESKSGESWVKGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEASNALKKQMWAEAQTDKVRLKDDIFNKLDFASMGGNKVETQDTCPIVEGHQSPLLDINIDADNNEASPSTAENQKAAPVAQSLSVERPSSVQDLCTGPDNPQAQLSAQYSKRSRSQLKSYISHIAEETFVYRSLPLGQDRRRNRYWQFVASASCNDPGSGRIFVEYHDGNWRLIDSEEAFNALLNSLDSRGMRESHLRLMLLKIENPFKENVRKNTLSNKIGSRDEADETDSSPDLQTGTDTPSSTLCGLNSDVSETSSSFKIELGKSESEKKAALRRYQDFQKWMWKECYCSSILCAMKHGRKRGSPQVDICDICLNPYFFEDSHCNCCHRTFPSNNGFNFSKHAFQCGDKLSKDISNLDSSLPLRTRLFKALLAFIEAFVPPEAFQSIWKEDIRRHWGLKLSKSSSADELLQILTLLERALKRDFLSSTFTTTEELLRSSSMSESAAHTSTNPESVATLPWVPQTTAAVFLRLFELDGSIIYVPREKTELREEKDSRECIKLPSRYNPSKSSKVVEPEPADSDHDDFMKVKSAPMKIARSSNKRGRGSHDKGRGKKLSKRMRDSKRDTSRNVKVTENLSQRIKQQGRGSQGQAGGRGRRTVRKRRVEKRAVEDLLLGHGAASHSSSIGREPLRSLDEDWDDRKASPMTPIHMGAADISNSAEEAESGDNAQAVESGDNAQAVESGDNAQAVESDDNDEAVEYDQGNWEIGFSGTPNRWSRHLVNMSDEDVEASEDDNDNGIEEEDSEADVMSEGSDGMANGVVNGAGSDSADSED 1559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4373g00004 1559 Pfam HB1, ASXL, restriction endonuclease HTH domain 529 597 IPR007759 GO:0006355
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 1 15 - -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 997 1035 - -
Gabi4373g00004 1559 Gene3D - 21 96 - -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 1015 1035 - -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 148 166 - -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 842 861 - -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 1357 1375 - -
Gabi4373g00004 1559 ProSiteProfiles DDT domain profile. 347 406 IPR018501 -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 1330 1344 - -
Gabi4373g00004 1559 SMART HOX_1 37 99 IPR001356 GO:0003677
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 1513 1535 - -
Gabi4373g00004 1559 Coils Coil 240 274 - -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 1446 1473 - -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 1 47 - -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 1300 1316 - -
Gabi4373g00004 1559 ProSitePatterns 'Homeobox' domain signature. 70 93 IPR017970 GO:0000981|GO:0006355
Gabi4373g00004 1559 ProSiteProfiles HARE-type HTH domain profile. 529 598 IPR007759 GO:0006355
Gabi4373g00004 1559 Pfam DDT domain 348 403 IPR018501 -
Gabi4373g00004 1559 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 20 247 IPR044977 GO:0006357
Gabi4373g00004 1559 SMART testlast3 347 406 IPR018501 -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 1276 1559 - -
Gabi4373g00004 1559 CDD homeodomain 40 94 IPR001356 GO:0003677
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 87 195 - -
Gabi4373g00004 1559 Pfam Homeodomain 38 94 IPR001356 GO:0003677
Gabi4373g00004 1559 SUPERFAMILY Homeodomain-like 25 94 IPR009057 -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 631 650 - -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 99 126 - -
Gabi4373g00004 1559 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 914 986 IPR028941 -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 844 861 - -
Gabi4373g00004 1559 ProSiteProfiles 'Homeobox' domain profile. 35 95 IPR001356 GO:0003677
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 626 650 - -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 1414 1429 - -
Gabi4373g00004 1559 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 735 778 IPR028942 -
Gabi4373g00004 1559 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4373g00004 Gabi-Chr4373 11636 21857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4373g00004 30 248 Homeobox Transcription Factor Family AT1G28420 46.983 1.19e-45 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gabi4373g00004 WSD 3.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4373g00004 - - gmx:100818817 1917.51