Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4373g00003 ATGGAGGGCGAGGCCGGTTCGGAGGGACACAATAGGGGTGGCGCAGATGATAACAGCAACGACAATAATGGAAGCAATAGCAAGATTGCGAATTCCAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAGACCCCCTTTCAGCTTCAAAATCTCGAGAAAGCTTATGCTTTGGATACTTATCCTTCGGAGGCGATGAGATTAGAGTTGTCGGAAAAGTTGGGGTTGTCGGATCGGCAACTGCAGACGTGGTTCTGTCATAGGAGGTTGAAGGACAAGAAGGACTTGCCTCCCAGGAAACGGCCGCGGAAGGTGGCAGCAGAGCCTTTGCCAGATTCCGACTTGCCTCCCAAGAAACGGCCGCGGAAGGTGGCAGCAGAGCTTTTGCCAGATTCCCCCACAGATGACATGAGGTTGGACCCTGAACTTGGCAATGAGTATGGATCCGGGTCGGGTTCGGGGTCCAGCCCGCTTACCCGTTCTGAGTCCCGGAATGCGATGCCCCAGGGCTTGCCGGGTTATTATGAGTCCCCTCAGGCTGGAATGGAGAGTAGAGCAATTGCTTCTGTGGAGGCACAGTTAGGGGAGCCGTTGAGGGAAGATGGACCCATTCTAGGAGTAGAGTTTGACCCATTGCCACCAGATGCATTTGGGGCACCCATAGTTACAGAACAGCGGAAGCGACCTAGTCTTGCCTATGACAGTAAAATATATGATAGGCATGATATGAGAGCAAATAAGGCTTTGGCAAGGACATTCCATGAATATCAATTTCTACCAAACCAGTCTGGCATTAGGACTGATGCTTTTGGACAGTTCAGCCAACCTCATTTACATGATCCAATGGAGGGTCCTGCCAGAAACCCTCCTTTTGTTCTTGGAAATGAACAGCCACCTAGAATTCATGCTACCAAAGGTCATTCTTCTCGTTCACAACAAGACAAGCAAGGGATTCCCTATCAGTCTCCTCCTGGAGATAAAGATGATGCCCCCCAAACGGAATTATACACAAACATAGCTAATATCGGAATGAACTCTCACTTTACTGATCACCAAATTGTTGGGCCAGAAAGTCCCTCTGCTTTACCTAGTGGACAAGTTTTGCCTAACAATATGCGGATCGAGAAGAAACGAAAGAGTGATGATGCCAGAATTACAAGGGAAGTTGAAGCCCATGAGATGAAGATCCGAAAAGAGCATGAGAAACAAGATAACCTTAGACGAAAGAGTGAAGAGCGAATGAAGAAAGAGATGGAGAGACAAGATCGTGAAAGGAGGAAGGAAGAAGAGAGGTTGATGCGTGAGAGACAACGTGAAGAGGAAAGAACAAAACGTGAGCAAAAACGTGAAATTGAACGAAGGGAAAAGCATTTGCTGAAGGAAAATTTAAGAGCTGAGAAATTGAGGCAAAAAGAAGAGCTTCGCAAAGAAAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCAACTGCCCGTAGAATGGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAATTGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATACGTCTTGATTTTGATACTTTGCAAAACCTTGAATCATATAAGGATTCATTGTGTGTTCTCCCACCCAAGAGTGTAAAGCTAAGAAAACCATTTGCTATACAACCCTGGATCAACTCTGAAGAGAATGTTGGTAACCTGCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGGCCTTTTACTCTCGATGAGTTTATGCAAGCATTTCACGACAATGATTCAAGACTGTTGGGTGAGATACATGTTGCTCTTCTTAAAGTGATAATAAAAGACATTGAGGATGTTGCAAGGACACCTTCTACAGGATTAGGAATGAATCAGAATGGTGCTGTTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGGTTTGACATACGAAATTGGCATAAGCACTTAAATCAGTTGACATGGCCGGAAATCTTCCGACAGCTAGCATTATCTGCAGGATATGGACCACAGTTGAAGAAAAGAAGTGTTACATGGTCCTATGAAAAAGATAAAGACGAGGGCAGAAGTTGCGAAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCCGAAAATGCAGTTGCAAAAATGCAGGAGAAAGGGCTATTAGCACCTCGAAGATCTAGGCATAGGTTAACTCCTGGAACAGTTAAGTTTGCAGCATTTCATGTTCTCTCGCTTGAGGGTAGCAAGGGATTGACAGTACTAGAGCTCGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACACCTGAGGCATCCATTTCTGTTGCTTTGACAAGAGATGCCAAGCTTTTTGAAAGAATAGCTCCATCAACGTATCGTGTTCGTTCTGCATTTAGAAAAGATCCTGCTGATGCTGAGTCCATTCTGTCTGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCAAGCTGGGGAAGATGCTGATGATGTTGCAAGAGAAGAAGAGTCTGAAAGTGACGAAGTTGATGAGGATCCTGAAGTTGATGACTTGGTAAATCCTTCAATTGCAAAAAAAACATCTGAACTGTGTGATGATTTATCATCAAATGGAAAAGAAAATTTGGTTAATGATGTAGAACTTCAAGATGAGTTTGATAAGGATATGCCTTGTTTTCCTGAGAATGGTTCAAAGAATACCGATTGTGCAAGTACTGCCACTGGACAACCTGTTGCTTGTGAAGATCTGAATGCTGGAAATCTTGGTGAAGATAATACGGAAATTGATGAAAGCAAGTCTGGAGAATCATGGGTTAAAGGGCTTGCAGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTGTTGGTTGGTGTGGCAAACGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCATCAAATGCACTGAAGAAGCAAATGTGGGCAGAAGCACAGACAGACAAAGTTCGTCTGAAAGATGATATTTTTAATAAATTAGATTTTGCATCTATGGGTGGCAATAAAGTTGAAACACAAGACACATGTCCTATTGTGGAGGGCCACCAAAGTCCATTGCTTGACATTAATATTGACGCTGATAATAATGAGGCATCACCCAGCACTGCAGAAAATCAAAAAGCAGCTCCTGTTGCACAGAGCCTGTCTGTTGAAAGGCCCTCTTCAGTTCAAGATCTCTGTACAGGTCCAGATAACCCTCAGGCTCAGCTATCTGCACAATATTCAAAAAGGTCACGATCCCAGTTGAAATCTTATATTTCCCACATAGCGGAGGAGACGTTTGTCTACAGATCCTTACCCCTTGGCCAAGATCGCCGACGTAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGATCCTGGCTCTGGCAGGATCTTTGTTGAATATCATGATGGAAATTGGAGGCTTATTGATTCTGAAGAGGCCTTCAATGCACTTTTGAATTCACTGGATTCACGTGGGATGAGGGAATCTCATTTGCGTTTGATGTTGCTGAAGATTGAAAATCCGTTTAAGGAAAATGTTCGAAAGAACACACTTAGCAACAAAATTGGAAGCAGAGATGAAGCTGATGAAACTGATTCCAGTCCTGATCTCCAGACTGGAACTGACACTCCTAGCAGTACTCTTTGTGGCTTGAACTCTGATGTTTCAGAAACTTCATCATCCTTCAAAATTGAGCTCGGGAAAAGTGAGAGCGAGAAGAAAGCTGCCTTGAGAAGGTATCAAGATTTCCAAAAATGGATGTGGAAAGAATGCTACTGCTCATCAATATTATGTGCAATGAAACATGGGAGAAAGAGAGGCAGCCCTCAGGTTGACATCTGTGATATCTGTCTCAACCCTTATTTCTTTGAAGACTCTCATTGCAATTGTTGCCACCGCACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGAGACAAGTTATCCAAAGATATTAGTAATTTAGATTCTTCTCTTCCCTTGCGGACAAGATTGTTTAAGGCTCTTCTTGCTTTTATTGAGGCATTTGTTCCACCTGAAGCATTTCAATCAATTTGGAAAGAAGATATTAGGAGGCATTGGGGTCTGAAGTTAAGCAAATCATCTTCTGCTGATGAACTTCTACAGATATTGACCCTACTTGAGAGAGCATTAAAGCGAGATTTTTTATCATCAACCTTCACTACAACAGAGGAACTGTTGCGGTCGAGCAGTATGTCAGAGAGTGCTGCACATACTTCTACTAATCCTGAATCAGTTGCTACACTTCCATGGGTTCCACAGACTACTGCAGCTGTGTTTCTTAGACTTTTTGAGTTGGATGGATCCATAATCTATGTACCGCGTGAGAAAACTGAGCTTCGTGAGGAGAAAGACTCTAGGGAGTGCATAAAGCTTCCTTCAAGATATAATCCCTCCAAATCTAGTAAAGTGGTTGAACCAGAACCAGCAGATTCGGACCATGATGATTTCATGAAAGTTAAATCTGCTCCTATGAAAATTGCACGGAGCAGCAATAAACGTGGACGAGGGAGTCATGATAAAGGACGGGGTAAAAAGCTATCTAAAAGAATGAGGGATTCTAAACGAGATACCAGCCGCAATGTTAAGGTCACTGAGAATCTAAGTCAGAGAATTAAACAGCAGGGACGAGGATCACAAGGACAAGCTGGTGGACGTGGTCGCCGGACAGTGAGGAAAAGGAGAGTGGAAAAAAGGGCTGTTGAAGATTTGTTGCTGGGCCATGGGGCTGCCTCTCATAGCTCCAGTATCGGTAGGGAACCATTGAGAAGCTTGGATGAGGATTGGGATGATAGAAAGGCAAGTCCCATGACTCCCATCCACATGGGGGCTGCCGACATCAGTAACAGTGCTGAAGAGGCTGAATCTGGTGATAATGCTCAAGCAGTGGAATCTGGTGATAATGCTCAAGCAGTGGAATCTGGTGATAATGCTCAAGCAGTGGAATCTGATGACAATGATGAAGCAGTGGAATATGATCAAGGAAACTGGGAGATTGGTTTTAGCGGTACCCCCAACAGATGGAGTAGGCATTTGGTTAATATGAGTGATGAAGATGTGGAAGCTTCTGAAGATGACAATGACAATGGCATTGAAGAGGAGGATTCAGAGGCAGATGTTATGAGCGAGGGTTCAGATGGTATGGCTAATGGAGTTGTAAATGGAGCAGGCTCAGACTCGGCTGATTCTGAAGATTAG 5331 0.4373 MEGEAGSEGHNRGGADDNSNDNNGSNSKIANSNEGQSKPKRQMKTPFQLQNLEKAYALDTYPSEAMRLELSEKLGLSDRQLQTWFCHRRLKDKKDLPPRKRPRKVAAEPLPDSDLPPKKRPRKVAAELLPDSPTDDMRLDPELGNEYGSGSGSGSSPLTRSESRNAMPQGLPGYYESPQAGMESRAIASVEAQLGEPLREDGPILGVEFDPLPPDAFGAPIVTEQRKRPSLAYDSKIYDRHDMRANKALARTFHEYQFLPNQSGIRTDAFGQFSQPHLHDPMEGPARNPPFVLGNEQPPRIHATKGHSSRSQQDKQGIPYQSPPGDKDDAPQTELYTNIANIGMNSHFTDHQIVGPESPSALPSGQVLPNNMRIEKKRKSDDARITREVEAHEMKIRKEHEKQDNLRRKSEERMKKEMERQDRERRKEEERLMRERQREEERTKREQKREIERREKHLLKENLRAEKLRQKEELRKEKEAERRKAALEKATARRMAKESMELIEDEQLELMELAASSKGFSSIIRLDFDTLQNLESYKDSLCVLPPKSVKLRKPFAIQPWINSEENVGNLLMVWRFLITFADVLELWPFTLDEFMQAFHDNDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAVNSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALSAGYGPQLKKRSVTWSYEKDKDEGRSCEDIISTLRNGSAAENAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRVRSAFRKDPADAESILSEARKKIQIFENGFQAGEDADDVAREEESESDEVDEDPEVDDLVNPSIAKKTSELCDDLSSNGKENLVNDVELQDEFDKDMPCFPENGSKNTDCASTATGQPVACEDLNAGNLGEDNTEIDESKSGESWVKGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEASNALKKQMWAEAQTDKVRLKDDIFNKLDFASMGGNKVETQDTCPIVEGHQSPLLDINIDADNNEASPSTAENQKAAPVAQSLSVERPSSVQDLCTGPDNPQAQLSAQYSKRSRSQLKSYISHIAEETFVYRSLPLGQDRRRNRYWQFVASASCNDPGSGRIFVEYHDGNWRLIDSEEAFNALLNSLDSRGMRESHLRLMLLKIENPFKENVRKNTLSNKIGSRDEADETDSSPDLQTGTDTPSSTLCGLNSDVSETSSSFKIELGKSESEKKAALRRYQDFQKWMWKECYCSSILCAMKHGRKRGSPQVDICDICLNPYFFEDSHCNCCHRTFPSNNGFNFSKHAFQCGDKLSKDISNLDSSLPLRTRLFKALLAFIEAFVPPEAFQSIWKEDIRRHWGLKLSKSSSADELLQILTLLERALKRDFLSSTFTTTEELLRSSSMSESAAHTSTNPESVATLPWVPQTTAAVFLRLFELDGSIIYVPREKTELREEKDSRECIKLPSRYNPSKSSKVVEPEPADSDHDDFMKVKSAPMKIARSSNKRGRGSHDKGRGKKLSKRMRDSKRDTSRNVKVTENLSQRIKQQGRGSQGQAGGRGRRTVRKRRVEKRAVEDLLLGHGAASHSSSIGREPLRSLDEDWDDRKASPMTPIHMGAADISNSAEEAESGDNAQAVESGDNAQAVESGDNAQAVESDDNDEAVEYDQGNWEIGFSGTPNRWSRHLVNMSDEDVEASEDDNDNGIEEEDSEADVMSEGSDGMANGVVNGAGSDSADSED 1776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 1 15 - -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 1517 1533 - -
Gabi4373g00003 1776 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 952 995 IPR028942 -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 1663 1690 - -
Gabi4373g00003 1776 Gene3D - 21 96 - -
Gabi4373g00003 1776 Coils Coil 389 457 - -
Gabi4373g00003 1776 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 20 1768 IPR044977 GO:0006357
Gabi4373g00003 1776 Coils Coil 460 491 - -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 1061 1078 - -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 148 166 - -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 1730 1752 - -
Gabi4373g00003 1776 SUPERFAMILY Homeodomain-like 25 94 IPR009057 -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 349 449 - -
Gabi4373g00003 1776 ProSiteProfiles HARE-type HTH domain profile. 746 815 IPR007759 GO:0006355
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 1574 1592 - -
Gabi4373g00003 1776 Pfam HB1, ASXL, restriction endonuclease HTH domain 746 814 IPR007759 GO:0006355
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 372 449 - -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 1547 1561 - -
Gabi4373g00003 1776 SMART HOX_1 37 99 IPR001356 GO:0003677
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 87 211 - -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 1059 1078 - -
Gabi4373g00003 1776 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1131 1203 IPR028941 -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 1 47 - -
Gabi4373g00003 1776 ProSiteProfiles DDT domain profile. 564 623 IPR018501 -
Gabi4373g00003 1776 ProSitePatterns 'Homeobox' domain signature. 70 93 IPR017970 GO:0000981|GO:0006355
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 272 334 - -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 843 867 - -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 1214 1252 - -
Gabi4373g00003 1776 CDD homeodomain 40 94 IPR001356 GO:0003677
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 1631 1646 - -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 99 126 - -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 848 867 - -
Gabi4373g00003 1776 Pfam DDT domain 565 620 IPR018501 -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 302 319 - -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 1232 1252 - -
Gabi4373g00003 1776 SMART testlast3 564 623 IPR018501 -
Gabi4373g00003 1776 ProSiteProfiles 'Homeobox' domain profile. 35 95 IPR001356 GO:0003677
Gabi4373g00003 1776 Pfam Homeodomain 38 94 IPR001356 GO:0003677
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 1493 1776 - -
Gabi4373g00003 1776 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4373g00003 Gabi-Chr4373 11636 21857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4373g00003 30 1717 Homeobox Transcription Factor Family AT1G28420 48.065 0.0 1292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gabi4373g00003 WSD 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4373g00003 - - gmx:100818817 2444.08