Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4373g00001 ATGGAGGGCGAGGCCGGTTCGGAGGGACACAATAGGGGTGGCGCAGATGATAACAGCAACGACAATAATGGAAGCAATAGCAAGATTGCGAATTCCAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAGACCCCCTTTCAGCTTCAAAATCTCGAGAAAGCTTATGCTTTGGATACTTATCCTTCGGAGGCGATGAGATTAGAGTTGTCGGAAAAGTTGGGGTTGTCGGATCGGCAACTGCAGACGTGGTTCTGTCATAGGAGGTTGAAGGACAAGAAGGACTTGCCTCCCAGGAAACGGCCGCGGAAGGTGGCAGCAGAGCCTTTGCCAGATTCCGACTTGCCTCCCAAGAAACGGCCGCGGAAGGTGGCAGCAGAGCTTTTGCCAGATTCCCCCACAGATGACATGAGGTTGGACCCTGAACTTGGCAATGAGTATGGATCCGGGTCGGGTTCGGGGTCCAGCCCGCTTACCCGTTCTGAGTCCCGGAATGCGATGCCCCAGGGCTTGCCGGGTTATTATGAGTCCCCTCAGGCTGGAATGGAGAGTAGAGCAATTGCTTCTGTGGAGGCACAGTTAGGGGAGCCGTTGAGGGAAGATGGACCCATTCTAGGAGTAGAGTTTGACCCATTGCCACCAGATGCATTTGGGGCACCCATAGCAGTTACAGAACAGCGGAAGCGACCTAGTCTTGCCTATGACAGTAAAATATATGATAGGCATGATATGAGAGCAAATAAGGCTTTGGCAAGGACATTCCATGAATATCAATTTCTACCAAACCAGTCTGGCATTAGGACTGATGCTTTTGGACAGTTCAGCCAACCTCATTTACATGATCCAATGGAGGGTCCTGCCAGAAACCCTCCTTTTGTTCTTGGAAATGAACAGCCACCTAGAATTCATGCTACCAAAGGTCATTCTTCTCGTTCACAACAAGACAAGCAAGGGATTCCCTATCAGTCTCCTCCTGGAGATAAAGATGATGCCCCCCAAACGGAATTATACACAAACATAGCTAATATCGGAATGAACTCTCACTTTACTGATCACCAAATTGTTGGGCCAGAAAGTCCCTCTGCTTTACCTAGTGGACAAGTTTTGCCTAACAATATGCGGATCGAGAAGAAACGAAAGAGTGATGATGCCAGAATTACAAGGGAAGTTGAAGCCCATGAGATGAAGATCCGAAAAGAGCATGAGAAACAAGATAACCTTAGACGAAAGAGTGAAGAGCGAATGAAGAAAGAGATGGAGAGACAAGATCGTGAAAGGAGGAAGGAAGAAGAGAGGTTGATGCGTGAGAGACAACGTGAAGAGGAAAGAACAAAACGTGAGCAAAAACGTGAAATTGAACGAAGGGAAAAGCATTTGCTGAAGGAAAATTTAAGAGCTGAGAAATTGAGGCAAAAAGAAGAGCTTCGCAAAGAAAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCAACTGCCCGTAGAATGGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAATTGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATACGTCTTGATTTTGATACTTTGCAAAACCTTGAATCATATAAGGATTCATTGTGTGTTCTCCCACCCAAGAGTGTAAAGCTAAGAAAACCATTTGCTATACAACCCTGGATCAACTCTGAAGAGAATGTTGGTAACCTGCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGGCCTTTTACTCTCGATGAGTTTATGCAAGCATTTCACGACAATGATTCAAGACTGTTGGGTGAGATACATGTTGCTCTTCTTAAAGTGATAATAAAAGACATTGAGGATGTTGCAAGGACACCTTCTACAGGATTAGGAATGAATCAGAATGGTGCTGTTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGGTTTGACATACGAAATTGGCATAAGCACTTAAATCAGTTGACATGGCCGGAAATCTTCCGACAGCTAGCATTATCTGCAGGATATGGACCACAGTTGAAGAAAAGAAGTGTTACATGGTCCTATGAAAAAGATAAAGACGAGGGCAGAAGTTGCGAAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCCGAAAATGCAGTTGCAAAAATGCAGGAGAAAGGGCTATTAGCACCTCGAAGATCTAGGCATAGGTTAACTCCTGGAACAGTTAAGTTTGCAGCATTTCATGTTCTCTCGCTTGAGGGTAGCAAGGGATTGACAGTACTAGAGCTCGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACACCTGAGGCATCCATTTCTGTTGCTTTGACAAGAGATGCCAAGCTTTTTGAAAGAATAGCTCCATCAACGTATCGTGTTCGTTCTGCATTTAGAAAAGATCCTGCTGATGCTGAGTCCATTCTGTCTGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCAAGCTGGGGAAGATGCTGATGATGTTGCAAGAGAAGAAGAGTCTGAAAGTGACGAAGTTGATGAGGATCCTGAAGTTGATGACTTGGTAAATCCTTCAATTGCAAAAAAAACATCTGAACTGTGTGATGATTTATCATCAAATGGAAAAGAAAATTTGGTTAATGATGTAGAACTTCAAGATGAGTTTGATAAGGATATGCCTTGTTTTCCTGAGAATGGTTCAAAGAATACCGATTGTGCAAGTACTGCCACTGGACAACCTGTTGCTTGTGAAGATCTGAATGCTGGAAATCTTGGTGAAGATAATACGGAAATTGATGAAAGCAAGTCTGGAGAATCATGGGTTAAAGGGCTTGCAGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTGTTGGTTGGTGTGGCAAACGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCATCAAATGCACTGAAGAAGCAAATGTGGGCAGAAGCACAGACAGACAAAGTTCGTCTGAAAGATGATATTTTTAATAAATTAGATTTTGCATCTATGGGTGGCAATAAAGTTGAAACACAAGACACATGTCCTATTGTGGAGGGCCACCAAAGTCCATTGCTTGACATTAATATTGACGCTGATAATAATGAGGCATCACCCAGCACTGCAGAAAATCAAAAAGCAGCTCCTGTTGCACAGAGCCTGTCTGTTGAAAGGCCCTCTTCAGTTCAAGATCTCTGTACAGGTCCAGATAACCCTCAGGCTCAGCTATCTGCACAATATTCAAAAAGGTCACGATCCCAGTTGAAATCTTATATTTCCCACATAGCGGAGGAGACGTTTGTCTACAGATCCTTACCCCTTGGCCAAGATCGCCGACGTAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGATCCTGGCTCTGGCAGGATCTTTGTTGAATATCATGATGGAAATTGGAGGCTTATTGATTCTGAAGAGGCCTTCAATGCACTTTTGAATTCACTGGATTCACGTGGGATGAGGGAATCTCATTTGCGTTTGATGTTGCTGAAGATTGAAAATCCGTTTAAGGAAAATGTTCGAAAGAACACACTTAGCAACAAAATTGGAAGCAGAGATGAAGCTGATGAAACTGATTCCAGTCCTGATCTCCAGACTGGAACTGACACTCCTAGCAGTACTCTTTGTGGCTTGAACTCTGATGTTTCAGAAACTTCATCATCCTTCAAAATTGAGCTCGGGAAAAGTGAGAGCGAGAAGAAAGCTGCCTTGAGAAGGTATCAAGATTTCCAAAAATGGATGTGGAAAGAATGCTACTGCTCATCAATATTATGTGCAATGAAACATGGGAGAAAGAGAGGCAGCCCTCAGGTTGACATCTGTGATATCTGTCTCAACCCTTATTTCTTTGAAGACTCTCATTGCAATTGTTGCCACCGCACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGAGACAAGTTATCCAAAGATATTAGTAATTTAGATTCTTCTCTTCCCTTGCGGACAAGATTGTTTAAGGCTCTTCTTGCTTTTATTGAGGCATTTGTTCCACCTGAAGCATTTCAATCAATTTGGAAAGAAGATATTAGGAGGCATTGGGGTCTGAAGTTAAGCAAATCATCTTCTGCTGATGAACTTCTACAGATATTGACCCTACTTGAGAGAGCATTAAAGCGAGATTTTTTATCATCAACCTTCACTACAACAGAGGAACTGTTGCGGTCGAGCAGTATGTCAGAGAGTGCTGCACATACTTCTACTAATCCTGAATCAGTTGCTACACTTCCATGGGTTCCACAGACTACTGCAGCTGTGTTTCTTAGACTTTTTGAGTTGGATGGATCCATAATCTATGTACCGCGTGAGAAAACTGAGCTTCGTGAGGAGAAAGACTCTAGGGAGTGCATAAAGCTTCCTTCAAGATATAATCCCTCCAAATCTAGTAAAGTGGTTGAACCAGAACCAGCAGATTCGGACCATGATGATTTCATGAAAGTTAAATCTGCTCCTATGAAAATTGCACGGAGCAGCAATAAACGTGGACGAGGGAGTCATGATAAAGGACGGGGTAAAAAGCTATCTAAAAGAATGAGGGATTCTAAACGAGATACCAGCCGCAATGTTAAGGTCACTGAGAATCTAAGTCAGAGAATTAAACAGCAGGGACGAGGATCACAAGGACAAGCTGGTGGACGTGGTCGCCGGACAGTGAGGAAAAGGAGAGTGGAAAAAAGGGCTGTTGAAGATTTGTTGCTGGGCCATGGGGCTGCCTCTCATAGCTCCAGTATCGGTAGGGAACCATTGAGAAGCTTGGATGAGGATTGGGATGATAGAAAGGCAAGTCCCATGACTCCCATCCACATGGGGGCTGCCGACATCAGTAACAGTGCTGAAGAGGCTGAATCTGGTGATAATGCTCAAGCAGTGGAATCTGGTGATAATGCTCAAGCAGTGGAATCTGGTGATAATGCTCAAGCAGTGGAATCTGATGACAATGATGAAGCAGTGGAATATGATCAAGGAAACTGGGAGATTGGTTTTAGCGGTACCCCCAACAGATGGAGTAGGCATTTGGTTAATATGAGTGATGAAGATGTGGAAGCTTCTGAAGATGACAATGACAATGGCATTGAAGAGGAGGATTCAGAGGCAGATGTTATGAGCGAGGGTTCAGATGGTATGGCTAATGGAGTTGTAAATGGAGCAGGCTCAGACTCGGCTGATTCTGAAGATTAG 5334 0.4374 MEGEAGSEGHNRGGADDNSNDNNGSNSKIANSNEGQSKPKRQMKTPFQLQNLEKAYALDTYPSEAMRLELSEKLGLSDRQLQTWFCHRRLKDKKDLPPRKRPRKVAAEPLPDSDLPPKKRPRKVAAELLPDSPTDDMRLDPELGNEYGSGSGSGSSPLTRSESRNAMPQGLPGYYESPQAGMESRAIASVEAQLGEPLREDGPILGVEFDPLPPDAFGAPIAVTEQRKRPSLAYDSKIYDRHDMRANKALARTFHEYQFLPNQSGIRTDAFGQFSQPHLHDPMEGPARNPPFVLGNEQPPRIHATKGHSSRSQQDKQGIPYQSPPGDKDDAPQTELYTNIANIGMNSHFTDHQIVGPESPSALPSGQVLPNNMRIEKKRKSDDARITREVEAHEMKIRKEHEKQDNLRRKSEERMKKEMERQDRERRKEEERLMRERQREEERTKREQKREIERREKHLLKENLRAEKLRQKEELRKEKEAERRKAALEKATARRMAKESMELIEDEQLELMELAASSKGFSSIIRLDFDTLQNLESYKDSLCVLPPKSVKLRKPFAIQPWINSEENVGNLLMVWRFLITFADVLELWPFTLDEFMQAFHDNDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAVNSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALSAGYGPQLKKRSVTWSYEKDKDEGRSCEDIISTLRNGSAAENAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRVRSAFRKDPADAESILSEARKKIQIFENGFQAGEDADDVAREEESESDEVDEDPEVDDLVNPSIAKKTSELCDDLSSNGKENLVNDVELQDEFDKDMPCFPENGSKNTDCASTATGQPVACEDLNAGNLGEDNTEIDESKSGESWVKGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEASNALKKQMWAEAQTDKVRLKDDIFNKLDFASMGGNKVETQDTCPIVEGHQSPLLDINIDADNNEASPSTAENQKAAPVAQSLSVERPSSVQDLCTGPDNPQAQLSAQYSKRSRSQLKSYISHIAEETFVYRSLPLGQDRRRNRYWQFVASASCNDPGSGRIFVEYHDGNWRLIDSEEAFNALLNSLDSRGMRESHLRLMLLKIENPFKENVRKNTLSNKIGSRDEADETDSSPDLQTGTDTPSSTLCGLNSDVSETSSSFKIELGKSESEKKAALRRYQDFQKWMWKECYCSSILCAMKHGRKRGSPQVDICDICLNPYFFEDSHCNCCHRTFPSNNGFNFSKHAFQCGDKLSKDISNLDSSLPLRTRLFKALLAFIEAFVPPEAFQSIWKEDIRRHWGLKLSKSSSADELLQILTLLERALKRDFLSSTFTTTEELLRSSSMSESAAHTSTNPESVATLPWVPQTTAAVFLRLFELDGSIIYVPREKTELREEKDSRECIKLPSRYNPSKSSKVVEPEPADSDHDDFMKVKSAPMKIARSSNKRGRGSHDKGRGKKLSKRMRDSKRDTSRNVKVTENLSQRIKQQGRGSQGQAGGRGRRTVRKRRVEKRAVEDLLLGHGAASHSSSIGREPLRSLDEDWDDRKASPMTPIHMGAADISNSAEEAESGDNAQAVESGDNAQAVESGDNAQAVESDDNDEAVEYDQGNWEIGFSGTPNRWSRHLVNMSDEDVEASEDDNDNGIEEEDSEADVMSEGSDGMANGVVNGAGSDSADSED 1777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 87 183 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 1215 1253 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 1 15 - -
Gabi4373g00001 1777 Gene3D - 21 96 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 1632 1647 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 1060 1079 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 1233 1253 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 148 166 - -
Gabi4373g00001 1777 SUPERFAMILY Homeodomain-like 25 94 IPR009057 -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 844 868 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 1062 1079 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 192 211 - -
Gabi4373g00001 1777 ProSiteProfiles HARE-type HTH domain profile. 747 816 IPR007759 GO:0006355
Gabi4373g00001 1777 ProSiteProfiles DDT domain profile. 565 624 IPR018501 -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 303 320 - -
Gabi4373g00001 1777 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1132 1204 IPR028941 -
Gabi4373g00001 1777 SMART HOX_1 37 99 IPR001356 GO:0003677
Gabi4373g00001 1777 Coils Coil 390 458 - -
Gabi4373g00001 1777 Coils Coil 461 492 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 1 47 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 1494 1777 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 273 333 - -
Gabi4373g00001 1777 ProSitePatterns 'Homeobox' domain signature. 70 93 IPR017970 GO:0000981|GO:0006355
Gabi4373g00001 1777 Pfam HB1, ASXL, restriction endonuclease HTH domain 747 815 IPR007759 GO:0006355
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 1731 1753 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 849 868 - -
Gabi4373g00001 1777 Pfam DDT domain 566 621 IPR018501 -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 1518 1534 - -
Gabi4373g00001 1777 CDD homeodomain 40 94 IPR001356 GO:0003677
Gabi4373g00001 1777 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 953 996 IPR028942 -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 99 126 - -
Gabi4373g00001 1777 SMART testlast3 565 624 IPR018501 -
Gabi4373g00001 1777 ProSiteProfiles 'Homeobox' domain profile. 35 95 IPR001356 GO:0003677
Gabi4373g00001 1777 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 20 1769 IPR044977 GO:0006357
Gabi4373g00001 1777 Pfam Homeodomain 38 94 IPR001356 GO:0003677
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 1575 1593 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 1664 1691 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 391 450 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 1548 1562 - -
Gabi4373g00001 1777 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4373g00001 Gabi-Chr4373 11636 21857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4373g00001 30 1718 Homeobox Transcription Factor Family AT1G28420 48.095 0.0 1296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gabi4373g00001 WSD 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4373g00001 - - gmx:100818817 2446