Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4372g00001 ATGAATGAAATTGAGATTCCTGACCCTTTCCTCTGCCCTATTTCCTTGCAACTTATGAAGGACCCTGTCACAGTATGCACAGGAATCACATACGATAGAGAAAACATAGAGAGATGGTTATTTTCATGCGAGAACAATATGTGCCCTGTTACTAAACAATCACTGTTACACACTGATCTTACCCCAAACCATACTTTACACCGTTTGATCCAAGCTTGGTGCACCCTTAATTCCTTCATTGGAATTGAATGTATTCCAATTCCAAAGCCAACCATTGACAAAACTCAAGTACTGAAACTCCTCTCTGAAGCAAAGAGATTCCCGGATAAGCATCTCAAATGCCTTAGAAGGCTTCAATCTATTGCTTTTGAAAGCGAAAGTAACAAAAACTCTCTGGAGTCAGCAGGGGCAATAGATTTCTTGGCTTCAACCATGATAAACAATGGCCAAGAAGATTCAACTGTTATTAGTGAAGCAGCTATTGAAGTTTTGTTTCACATAAATCTTTCAGGATCTCAGCTTAAGAATCTTATAAACAACGAGGGCATTCAATTTATTGAGTCTTTGTTTCAGGTCTTGAAGCTTGGGAACCACAAGTCTCGAGCTTATGCAACTATGCTATTGAAGTCAGCATTTGAGGTGGCTGGTCCAACCCAATTGAACAGTGTCAGAACAGAACTGTTTGTTGAAATAATAAGAGTGCTAAGGGATCAGATATCACATCAAGCTTCAAAGGCTGCATTGAAGCTTCTTGTGGAGTTGTGTCCAAAGGGTAGAAACCGAATCAAAGCAATTGAGGGTGGTGCGGTTTTAGTCCTCATTGAGCTCCTTTTTGATGTCTCTGAAAGAAGAGCATGTGAGCTTATGTTGATAACTTTGGATCGACTTTGTGGCTGTGCAGAAGGAAGGGCAGAATTGTTGAGCCATGGAGCTGGATTGGCTATTGTATCAAAGAAAATCCTAAGGGTTTCTCATGTGGCAAGTGATAGAGGGGTTAAAATTTTGACTTCCATTTGTAGGTATTCAGCCACCCCAAGAGTCCTTTACGAAATGATGCTATTTGGGGTTGTGTCCAAGTTATGTTTGGTGCTTCAAGTGGAAGGTAGTTTCAAGGCTAAGAAGCGGGCCAAGGAGATACTCACATTGCACTCTACAGTTTGGAAGGATTCTCCATGTATTCCTCTCCCTTTGCTTTCATCTTATCCATGA 1209 0.4094 MNEIEIPDPFLCPISLQLMKDPVTVCTGITYDRENIERWLFSCENNMCPVTKQSLLHTDLTPNHTLHRLIQAWCTLNSFIGIECIPIPKPTIDKTQVLKLLSEAKRFPDKHLKCLRRLQSIAFESESNKNSLESAGAIDFLASTMINNGQEDSTVISEAAIEVLFHINLSGSQLKNLINNEGIQFIESLFQVLKLGNHKSRAYATMLLKSAFEVAGPTQLNSVRTELFVEIIRVLRDQISHQASKAALKLLVELCPKGRNRIKAIEGGAVLVLIELLFDVSERRACELMLITLDRLCGCAEGRAELLSHGAGLAIVSKKILRVSHVASDRGVKILTSICRYSATPRVLYEMMLFGVVSKLCLVLQVEGSFKAKKRAKEILTLHSTVWKDSPCIPLPLLSSYP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4372g00001 402 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Gabi4372g00001 402 CDD RING-Ubox_PUB 7 60 IPR045210 -
Gabi4372g00001 402 Gene3D - 91 389 IPR011989 -
Gabi4372g00001 402 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Gabi4372g00001 402 SUPERFAMILY ARM repeat 109 380 IPR016024 -
Gabi4372g00001 402 SUPERFAMILY RING/U-box 4 84 - -
Gabi4372g00001 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Gabi4372g00001 402 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Gabi4372g00001 402 PANTHER WDSAM1 PROTEIN 3 394 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4372g00001 Gabi-Chr4372 44331 45539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4372g00001 3 402 U-box Gene Family AT2G35930 50.743 4.98e-146 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4372g00001 - - gmx:100778012 608.986