Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4370g00006 ATGGGTTGTGACTTTTCCAAGTGCTCAGCATGCTGCTGCGTTGCAGATCAAGGTGGTCAGGTTCCTGAGACTCACATTGATGAAAATGAAGACAACATTGAGGGCAACGGCTTGCCCCCGTTTCGTGAATACACAATTGATCAGCTTAGGAAGGCTACGGCTGGATTTGCTGTAGAAAATATAGTTTCCGAGCATGGAGAAAAGGCGCCAAATGTGGTCTATAAAGGGAAATTTGAAAATCAAATGCGAATTGCTGTCAAACGGTTCAACAAATCAGCCTGGCCAGAGGCACAGCAATTTTTGGGAGAGGCCAGGGCTGTTGGTCAGCTACGGAACCAAAGATTGGCAAATCTGATTGGATGTTGCTGGGATGGTGATGAGAGGATGCTTGTTGCAGAATATATGCCTAACGAAAATTTGGCGAAGCACTTGTTCCATTGGGAAACTCAGCCCATCAACTGGGCAATGCGACTGAGAGTTGCTTTACACCTTGCCCAAGCTCTGGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTAAATGCTTACAGAGTTCTTTTTGATGATGACTTCAATCCTAGACTTTCATGCTTCGGTCTCATGAAAAACAGTCGAGATGGGAAAAGTTACAGTACAAATTTGGCATTTACTCCACCTGAGTATCTGAGGACAGGTAGAATTACTCCAGAGAGTGTAACTTATAGCTTTGGTACCCTTTTGCTTGACCTTCTCAGCGGAAAACATATTCCTCCAAGCCATGCCCTTGACCTGATTAGGGACAGGAACTTTCAGATGCTAGTCGACTCTTGTTTAGAAGGACAAATTTCAAATGACGAGGGAACTGAATTAGTGCGTCTAGCTTCACGATGTTTACAATCTGAACCGGGAGAGCGTCCTAATCCAAATTCGTTGGTCACTGCCCTAATCCCTCTACAGAAGGATTCTGAGGTTCCTTCTCACGTGCTGATGGGTATACCAGATGGTACTTCTGTGTTTCCCCTTTCTCCTCTTGGGGAAGCTTGTCTACGAATGGATCTGACTGCCATACACGAGGTGATGGAGAAAATTGGGTATAAAGACGATGAGGGTGCAGCAACTGAGCAGCTTTCATTCCAAATGTGGACCAACCAGATGCAGGAAACATTAAACTCGAAGAAGAAGGGGGATGCTGCTTTTCGTCATAAGGACTTTAAATCTGCAATTGATAGCTATACTCAGTTCATTGATGTTGGAACCATGGTTTCTCCGACAGTTTATGCACGTCGTAGTCTGTCTTATCTCTTTAGCAATATGCCAGATGAAGCACTTAATGATGCATTGCAGGCGCAAATAATATCCCCTGTTTGGTACATTGCATCTTATTTACAAGCTGTTGCTCTTTTAGCACAGGGCAAGGAGAATGAGGCCCAAGTGGCACTTAAAGAGGGTTCTTCGCTTGAAACTAAAAAGAGCACAAATTAG 1467 0.4438 MGCDFSKCSACCCVADQGGQVPETHIDENEDNIEGNGLPPFREYTIDQLRKATAGFAVENIVSEHGEKAPNVVYKGKFENQMRIAVKRFNKSAWPEAQQFLGEARAVGQLRNQRLANLIGCCWDGDERMLVAEYMPNENLAKHLFHWETQPINWAMRLRVALHLAQALEYCTSKGRALYHDLNAYRVLFDDDFNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRITPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDRNFQMLVDSCLEGQISNDEGTELVRLASRCLQSEPGERPNPNSLVTALIPLQKDSEVPSHVLMGIPDGTSVFPLSPLGEACLRMDLTAIHEVMEKIGYKDDEGAATEQLSFQMWTNQMQETLNSKKKGDAAFRHKDFKSAIDSYTQFIDVGTMVSPTVYARRSLSYLFSNMPDEALNDALQAQIISPVWYIASYLQAVALLAQGKENEAQVALKEGSSLETKKSTN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4370g00006 488 FunFam probable serine/threonine-protein kinase At4g35230 381 488 - -
Gabi4370g00006 488 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4370g00006 488 SUPERFAMILY TPR-like 387 481 IPR011990 GO:0005515
Gabi4370g00006 488 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Gabi4370g00006 488 Pfam Protein tyrosine and serine/threonine kinase 73 309 IPR001245 GO:0004672|GO:0006468
Gabi4370g00006 488 SUPERFAMILY Protein kinase-like (PK-like) 36 319 IPR011009 -
Gabi4370g00006 488 Gene3D Transferase(Phosphotransferase) domain 1 136 327 - -
Gabi4370g00006 488 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 27 486 IPR045845 GO:0004672|GO:0009742
Gabi4370g00006 488 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Gabi4370g00006 488 Gene3D Tetratricopeptide repeat domain 377 487 IPR011990 GO:0005515
Gabi4370g00006 488 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4370g00006 Gabi-Chr4370 55404 65811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4370g00006 22 310 Glycoside Hydrolase AT3G07070 33.125 3.29e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gabi4370g00006 PK_Tyr_Ser-Thr 5.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4370g00006 K14500 - gmx:100797107 846.269