Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4370g00005 ATGGATGGGAGAGAAGCTATGTCATTCTCTGGTGGCCCTGCTTCATATTATATGCATAGAGGAGGTGTTGCAGGGTCTGGCTCTGGAACACAAACAGGGGGGTTCCATGCACCCCATGGTTTCAGAGCTTTGTCAAACGCTGGCTTTCCAGCTCAGTCTAATCCCCGGGATCAGGGTGGTTCTGTTGGTTCTAGTTCAACTTTTTCAGTAGAGCCTCAAACTCGTGCCAATTTTAGTCACGGTATTAGCATTGGAGCCTCTTCTGGGGTACCTTCAGGTGAGCCTGTGAAAAAGAAAAGAGGGAGACCTCGTAAATATGGTCCTGATGGACAAGTTTCTTTGAGACTGTCTCCAATGTCTGCCCCTGCTAATTCTACCCCAGGTTCAATCACAACTTCCAATAAAAGGGGTAGAGGGCGCCCACCTGGGTCTGGAAGGAAGCAACAACTAGCAGCTCTAGGTGAATGGATGAATAGTTCAGCAGGGCAGGCCTTTTCACCTCATGTTATCACTATTGGAGTTGGGGAGGACATTGTAGCAAAGTTACTGTCATTATCACAGCAGAGACCAAGGGCTCTGTGCATCATGTCGGGCACTGGGACAGTTTCTTCAGTTACTCTGCGACAACCTGCTACTACCAATGCCAGTATAACTTATGAGGGTCGATTCCAAATATTATGCTTGTCTGGTTCTTACCTGGTTGCTGAAGAGGGTGGACCCTCAAATAGAACAGGCGGCCTAAGTGTTTCCCTTTCTAGCCCTGATGGTCATGTTATTGGTGGCGCTGTTGCTATGCTTATTGCTGGAAGCCCAGTGCAGGTGGTAGTGTGCAGTTTTGTATATGGTGGCTCTAAGACAAAGACTAAGCAAGGGACCACTAACCAAGATGAAAGTTCTGAGCCTCATCACAGTGACAAGTTAGGTTCTCCAGCTAGTGCTCCACCTAGTCAGAACTACATGCCTTCTGCAACAAGCATGTGGCATGGATCACGACCAGCAGAGTTGAAAAGCCCGCACACACATACTGGCATTGACTTGACACGCGGGTGA 1050 0.4848 MDGREAMSFSGGPASYYMHRGGVAGSGSGTQTGGFHAPHGFRALSNAGFPAQSNPRDQGGSVGSSSTFSVEPQTRANFSHGISIGASSGVPSGEPVKKKRGRPRKYGPDGQVSLRLSPMSAPANSTPGSITTSNKRGRGRPPGSGRKQQLAALGEWMNSSAGQAFSPHVITIGVGEDIVAKLLSLSQQRPRALCIMSGTGTVSSVTLRQPATTNASITYEGRFQILCLSGSYLVAEEGGPSNRTGGLSVSLSSPDGHVIGGAVAMLIAGSPVQVVVCSFVYGGSKTKTKQGTTNQDESSEPHHSDKLGSPASAPPSQNYMPSATSMWHGSRPAELKSPHTHTGIDLTRG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4370g00005 349 Gene3D - 167 297 - -
Gabi4370g00005 349 MobiDBLite consensus disorder prediction 286 349 - -
Gabi4370g00005 349 MobiDBLite consensus disorder prediction 1 148 - -
Gabi4370g00005 349 SUPERFAMILY AF0104/ALDC/Ptd012-like 163 281 - -
Gabi4370g00005 349 MobiDBLite consensus disorder prediction 47 86 - -
Gabi4370g00005 349 SMART AT_hook_2 97 109 IPR017956 GO:0003677
Gabi4370g00005 349 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Gabi4370g00005 349 CDD DUF296 167 279 IPR005175 -
Gabi4370g00005 349 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 280 IPR005175 -
Gabi4370g00005 349 MobiDBLite consensus disorder prediction 310 325 - -
Gabi4370g00005 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 64 316 IPR039605 GO:0003680
Gabi4370g00005 349 ProSiteProfiles PPC domain profile profile. 162 301 IPR005175 -
Gabi4370g00005 349 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4370g00005 Gabi-Chr4370 25764 29511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4370g00005 1 349 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 50.129 2.47e-100 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4370g00005 - - gmx:100798706 493.426