Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi436g00003 ATGAGTGATATAAGGAAATGGTTCATGAAATCACATGACAAGGAAAAAAATGCCGGTGGCTCCAAGCCTTCTAATCAAGCGAAGTCTTCCCCTGATAAACCCCAACCGGCGAAAACGGTGCCTGTAGGTCAAGAAAGTTCAGGGAGGAGGATAACTAGCAAATATTTTAATACTGATAAAAAAAAGCCAAAAGATGAGAAAGAAACGCAGGAGCTCCCTGCTAAAAGAAAGAATATGAAGGACGGTGAGGAATTACCGGAGCCCCGTCTTTTAAAAAAAATTCATGAAGATGATGGAGGTGACTCTGTCTTGCCCACACATAAAAAGAAGTTAGCTGATACCACTCCAACAAAAAAATTGAAGAGTGGATCAGGTAGGGGGATTCCCCAAAAAGCCGCAGATTTGGAAGAAAGTGATGAAGATGATGACAAAGATGTTGTGTCTCCCGTTAAATCTGGTGGAAGGGGTCGTGGTGGAAGGGGAGCATCAACACAATCAACTGGTGGGAGAGGTAGAGGGGGTGGTAGGGGTGGATTTGTGAATTTCGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAACTGGCTTAACTTTTGTAATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGTCTCACTGCATCAGTCAGCAAGAAAACGAATTATCTCTTATGTGATGAAGATATTGGGGGACGGAAGTCTGCAAAAGCCAAAGAGCTAGGAACTTCCTTTCTCACAGAGGATGGGTTGTTCGATATGATTCGTAAGTCAAAACCTGCAAAAGCTCCTTCACAAGAAAAATACAAGAAATCTGTGAATAATGCTGTTGCATTAGCATCCCAGTCAAAAGGTCCTCCGAAAGCAGAAGCCAAGGTCTCTATATCTTCACGCTCACCTTCTACCAAAGCCAAGCTGAAGAAAGCAACTACTGTTCAGTCTTCTTTGATGTGGACAGAGAAGCATCGACCTACAGATCCAAAGGATATCATAGGGAATCAGTCACTTGTTTCCCAGCTTCGAAATTGGTTGAAAACTTGGCATGAACAATTTTTGGACACTGTTAACAAAAAACAGGGAAAAAAGAAAAATGACTCTGGTTCAAAAAAAGCTGTCTTGTTAAGTGGAACCCCTGGTATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGTAAAAGGAATCAGTGGAAGCAATGCAAATTCTATCAAGGAACTTGTAACCAATGAGGCCCTTGGTGTTGACATGGATCGGTCAAAGCTTTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTATTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAGAGCCTTGTGAACTACTGTTTGCTCCTTAGTTTTCGAAAGCCTACAAAGCAACAGATGGCAAAGAAGTTTATGGATGTTGCAAAGGCTGAAGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAACTGGCAGAAAGGGTTCATGGAGATATGCGCATGGCACTAAACCAGTTACAATATATGAGCCTCTCCATGTCAGTTATCAACTATGATGATATTAGGCAGCGCATGCTTACCAATGCAAAGGATGAAGACATTTCACCATTCACAGCTGTTGACAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAGAATGGACGAGAGGATTAATCTCAGCATGAGTGATCCTGATCTTGTTCCTCTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCTTGGCTGGTAAGGATGACAGTGGTATAAAACGCATGAACTTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAACGTACAGATTCGCAGATATAGACAGTGGCAGCTCTCTCAAACAAGTTCTGTTGCATCATGTATAATTCCAGCTTCATTGTTGCATGGGCAAAGGGAAATACTTGAACAGGGAGAACGAAATTTTAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCGACAATGGGCAAAAACATAAGGCTTTTGGATGATCTGCATCTTCACATTCTTGCTTCTCGTGAATCTAGTTCGGGAAGGGATACTATCCGCTTGGAATACCTTACTCTTCTTCTTAAACGATTGATAGAACCACTGCGAGTCCTGCCTAAGGCTGAAGCTGTTCAGGAAGTTGTGGAATTTATGAACACATACTCGATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCATCCTAATCCCCTAGATGGCATACAGCCTGCCATTAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCAAATCTCGGATGGTTCGGGCTGCCGATCTAGTTACTCTTCCTGGAATAAAGAAGGTTCCCAAGAAGCGAATTGCTGCTATTCTAGAACCAGCTGATGGAGGGGAACAAGGTGAAGGTGACACCTTGGACGAGAGTGAAGAAGAGAACACCTCTGACCAAGAAGGCACCACCACAGGCGATAAGCTGCAGTCAGAACTTCAAAGTTTGAATTCAAATGCCATGAAAGTACAATTGGAGTTGAAGGGAACGGGAAATTCAAGTTCCCAGAAGACATCTGCTGGCAGAGGTAGAGGTAAAGGTGCATCTGCATCTGCACAGAAGGTTCCTCAAACTTCAAGGGGTACTTCAAAAAGAAAAAGGTGA 2856 0.4282 MSDIRKWFMKSHDKEKNAGGSKPSNQAKSSPDKPQPAKTVPVGQESSGRRITSKYFNTDKKKPKDEKETQELPAKRKNMKDGEELPEPRLLKKIHEDDGGDSVLPTHKKKLADTTPTKKLKSGSGRGIPQKAADLEESDEDDDKDVVSPVKSGGRGRGGRGASTQSTGGRGRGGGRGGFVNFGERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEAEDLIKRHGGRLTASVSKKTNYLLCDEDIGGRKSAKAKELGTSFLTEDGLFDMIRKSKPAKAPSQEKYKKSVNNAVALASQSKGPPKAEAKVSISSRSPSTKAKLKKATTVQSSLMWTEKHRPTDPKDIIGNQSLVSQLRNWLKTWHEQFLDTVNKKQGKKKNDSGSKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIVKGISGSNANSIKELVTNEALGVDMDRSKLSKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKKFMDVAKAEGLQVNEIALEELAERVHGDMRMALNQLQYMSLSMSVINYDDIRQRMLTNAKDEDISPFTAVDKLFGFNAGKLRMDERINLSMSDPDLVPLLIQENYINYRPSLAGKDDSGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVASCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNIRLLDDLHLHILASRESSSGRDTIRLEYLTLLLKRLIEPLRVLPKAEAVQEVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAIKSALTKAYKEQSKSRMVRAADLVTLPGIKKVPKKRIAAILEPADGGEQGEGDTLDESEEENTSDQEGTTTGDKLQSELQSLNSNAMKVQLELKGTGNSSSQKTSAGRGRGKGASASAQKVPQTSRGTSKRKR 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi436g00003 951 SMART AAA_5 389 527 IPR003593 GO:0016887
Gabi436g00003 951 MobiDBLite consensus disorder prediction 1 202 - -
Gabi436g00003 951 Pfam BRCA1 C Terminus (BRCT) domain 201 276 IPR001357 -
Gabi436g00003 951 MobiDBLite consensus disorder prediction 867 884 - -
Gabi436g00003 951 MobiDBLite consensus disorder prediction 302 325 - -
Gabi436g00003 951 CDD AAA 378 489 - -
Gabi436g00003 951 SUPERFAMILY BRCT domain 199 280 IPR036420 -
Gabi436g00003 951 SMART BRCT_7 201 279 IPR001357 -
Gabi436g00003 951 MobiDBLite consensus disorder prediction 1 19 - -
Gabi436g00003 951 Gene3D - 598 707 - -
Gabi436g00003 951 FunFam Replication factor C subunit 1 598 707 - -
Gabi436g00003 951 FunFam Replication factor C subunit 1 175 278 - -
Gabi436g00003 951 Gene3D BRCT domain 177 279 IPR036420 -
Gabi436g00003 951 CDD BRCT_RFC1 199 277 - -
Gabi436g00003 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 586 IPR027417 -
Gabi436g00003 951 MobiDBLite consensus disorder prediction 54 116 - -
Gabi436g00003 951 MobiDBLite consensus disorder prediction 886 926 - -
Gabi436g00003 951 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 14 920 - -
Gabi436g00003 951 Pfam ATPase family associated with various cellular activities (AAA) 393 481 IPR003959 GO:0005524|GO:0016887
Gabi436g00003 951 Gene3D - 526 596 - -
Gabi436g00003 951 FunFam Replication factor C subunit 1 526 597 - -
Gabi436g00003 951 Gene3D - 337 525 IPR027417 -
Gabi436g00003 951 PIRSF RFC1 1 924 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Gabi436g00003 951 ProSiteProfiles BRCT domain profile. 199 280 IPR001357 -
Gabi436g00003 951 MobiDBLite consensus disorder prediction 183 198 - -
Gabi436g00003 951 MobiDBLite consensus disorder prediction 859 951 - -
Gabi436g00003 951 Pfam Replication factor RFC1 C terminal domain 666 828 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Gabi436g00003 951 CDD HLD_clamp_RFC 526 584 - -
Gabi436g00003 951 FunFam Replication factor C subunit 1 337 525 - -
Gabi436g00003 951 SUPERFAMILY post-AAA+ oligomerization domain-like 597 742 IPR008921 GO:0003677|GO:0006260
Gabi436g00003 951 Coils Coil 890 910 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi436g00003 1 902 Core DNA Replication Machinery Family AT5G22010 67.822 0.0 1122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi436g00003 K10754 - gmx:100790070 1481.85