Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4363g00013 ATGTCTAGCTGCAGCATCGATGTTGCACCTGAGCAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGCGTTCCATGCAGTAGCCTCTTTGACATCGTGACCGTCCGATGTGGACACTGCACCAACCTTTGGTCCGTGAACATGGCCGCTGCGTTTCAATCACTGTCATGGCAAGATGTTCAGGCACCAAGCCATGGCAATCCAGAATATAGGATTGAAACTGGCTCCACTTCCAAATGCAACAACAGGATTGCAATGCGTGCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACCGACCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAAATTCAGAGGATCAAGGCCAATAATCCTGATATCAGTCACAGAGAAGCCTTCAGTACAGCTGCAAAGAACTGGGCACATTTTCCTCATATTCATTTTGGGCTGATGTTGGAGAGCAACAAATCAAGCTAA 504 0.4742 MSSCSIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQAPSHGNPEYRIETGSTSKCNNRIAMRAPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKSS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4363g00013 167 CDD HMG-box_SF 113 149 - -
Gabi4363g00013 167 Gene3D High mobility group box domain 98 154 IPR036910 -
Gabi4363g00013 167 PANTHER PROTEIN YABBY 6-RELATED 1 165 IPR006780 GO:0007275
Gabi4363g00013 167 SUPERFAMILY HMG-box 103 152 IPR036910 -
Gabi4363g00013 167 Pfam YABBY protein 9 159 IPR006780 GO:0007275
Gabi4363g00013 167 FunFam axial regulator YABBY 5-like 97 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4363g00013 Gabi-Chr4363 98258 101803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4363g00013 8 167 C2C2-YABBY Transcription Factor Family AT2G26580 78.125 4.22e-91 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gabi4363g00013 YABBY 9e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4363g00013 K25796 - gmx:100499942 335.88