Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4363g00008 ATGAAGAAGGTAAGGAGAAAGATCGGAAAGTATGAGGTGGGTCGAACTATTGGGGAAGGTACGTTTGCCAAGGTTAAATTCGCAAAAAACACCGAGACAGGGGAGAGCGTGGCTATTAAAGTGATGGCTAAGGCCACCATTCTCAGGCACAAAATGGTTGAACAGATTAAAAGAGAGATATCCATTATGAAGATTGTCCGGCATCCTAATATAGTTAGGTTGCACGAGGTTTTGGCCAGCCAGACCAAGATCTACATAATCCTCGAGTTTGTAATGGGAGGGGAATTATATGATAAAATTGTTCAGCAGGGAAAGCTTTCTGAAAATGAATCTAGGCGCTACTTTCAACAACTTATAGATGCTGTTGCTCATTGTCACAGAAAGTGTGTGTACCATAGAGACTTGAAGCCTGAAAACCTTCTTCTTGATGCTTACGGAAATTTGAAGGTTTCTGACTTTGGATTGAGTGCATTGACTAAGCAGGGTGTTGGCCTTCTTTACACCACATGTGGGACCCCAAATTATGTTGCCCCTGAGGTGCTCAACAATCGAGGTTATGATGGTGCAGCAGCTGATGTTTGGTCATGTGGAGTCATCCTATATGTCCTAATGGCTGGATATCTTCCTTTTGAGGAGACAGACCTTCCAACACTGTACAAAAGGATCATTGCCGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCTGGGGCAAAGACATTGATACATAAAATTCTGGATCCGAATCCTAAAACTCGAGTGAAAATAGAAGAAATAAGGAAAGATCCATGGTTCCAGAGAAACTATGTTCCTGTCAAACACAGGGAAGATGAGCAAGTGAATTTGGCTGATGTTCAGGCTGTTTTTGATGATATTGAGGACCATTTTGTTGCTGAACGATCAGAGATTACTGAGGGAGGTCCTTTGATAATGAATGCATTTGAGATGATTACATTATCACAAGGGTTGAATCTTTCACCGCTATTTGACAGGCATGAGGATTATGTAAAGCGGCAAACTCGTTTTGTTTCCCGTAAACCAGCAAAAGTTATACTTTCATCTATTGAAGCTGTTGCAGAGTCAATAGGTCTTAAGGTCCATTCTCGCAATTACAAGATGAGGCTTGAAGGAGTTTCTGCAAATAAGGTTGGACAATTTGCGGTGGTCTTGGAGGTGTATGAAGTTGCCCCATTCCTTTTCATGGTAGATGTTCGAAAGGCGGCTGGGGATACTCTCGACTATCACAAGTTTTACAAGAATCTTTGTTCCAAACTAGAAAACATTATTTGGAGACCGGCAGAGACTATACCAAATTCTAGTCTGCTTCGACAAATGACTTTCTAA 1341 0.4161 MKKVRRKIGKYEVGRTIGEGTFAKVKFAKNTETGESVAIKVMAKATILRHKMVEQIKREISIMKIVRHPNIVRLHEVLASQTKIYIILEFVMGGELYDKIVQQGKLSENESRRYFQQLIDAVAHCHRKCVYHRDLKPENLLLDAYGNLKVSDFGLSALTKQGVGLLYTTCGTPNYVAPEVLNNRGYDGAAADVWSCGVILYVLMAGYLPFEETDLPTLYKRIIAAEFVCPFWFSAGAKTLIHKILDPNPKTRVKIEEIRKDPWFQRNYVPVKHREDEQVNLADVQAVFDDIEDHFVAERSEITEGGPLIMNAFEMITLSQGLNLSPLFDRHEDYVKRQTRFVSRKPAKVILSSIEAVAESIGLKVHSRNYKMRLEGVSANKVGQFAVVLEVYEVAPFLFMVDVRKAAGDTLDYHKFYKNLCSKLENIIWRPAETIPNSSLLRQMTF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4363g00008 446 FunFam Non-specific serine/threonine protein kinase 4 305 - -
Gabi4363g00008 446 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Gabi4363g00008 446 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Gabi4363g00008 446 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Gabi4363g00008 446 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Gabi4363g00008 446 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4363g00008 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 419 - -
Gabi4363g00008 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gabi4363g00008 446 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4363g00008 446 SUPERFAMILY Protein kinase-like (PK-like) 8 301 IPR011009 -
Gabi4363g00008 446 FunFam Non-specific serine/threonine protein kinase 304 430 - -
Gabi4363g00008 446 CDD CIPK_C 311 426 - -
Gabi4363g00008 446 Pfam NAF domain 307 366 IPR004041 GO:0007165
Gabi4363g00008 446 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4363g00008 446 Gene3D Kinase associated domain 1, KA1 307 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4363g00008 Gabi-Chr4363 43019 56513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4363g00008 1 372 CBL-interacting serine-threonine protein kinases AT5G35410 72.581 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi4363g00008 Pkinase 4.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4363g00008 - - gmx:100811380 795.808