Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4358g00004 ATGAGCATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCAACCCCTTCTCTTCATCAACACCAACACCAACACCGACACCAACACCAACACCAACACCATGGCCAACCCATTTCAGCAGATCAAAGTTCAAACCTTCCTCTCCCTTCACCAGCTTCTCTCAGTGTTGGTTTTGGCATTTTTCCACTCTTAACTGCCACTCCTTGCATGCCACAGCCTCAAAACAATGAGGTTCAAGAGTGTGGCAACAACAACAACAACAACTATTGGAACCTCACGATGTGCCCAGAAGTGAATCCTCCAAAAAAGGGTGTGATCAACGTGGATGTTGATGAAAGCCACAAGCTTGGGATGGAGAATGAAGAAAACGGGGTTTATGGTGCTGACTTCAGAGTGTGTCAAGATTGTGGTAACAGGGCAAAGAAAGATTGCATCTTTAGAAGATGCAGGACTTGTTGCAAGGGACGTGGATATGACTGCAACACTCACGTGAAGAGCACGTGGATTCCTTCAATTCGCCGGCGGGAGCGGGAGATAGCGGTGGTTGCCGGTGATGGTGGTGGTGGTGCCCTGGGTGAAAGTGGTTCTTCTGGAACCAAGAGGCCAAAAACTTTAGTGGGGTCATCACAAAATGCCACTGCCACTTCTCTTAGTTCCAATTCTAATGATGCTGGCTTCAAGCAGTGTTTACCAGGTCATGTTCGTGCACCTGCTGTGTTTAGGTGCCATAGAGTCTCTGCTATTGGCAATGGTGAAGATGAAGTTGCGTATTTGGCCACGGTTCATATTAGTGGCCATGTGTTCAAAGGGTTTCTCTATGATCATGGTGTTGATGGGAAAGATGCAAATGCAATTCCTTGTGTTTCAGAACTGCAATTGGGAAACAATTGCAGTGGCAAGAATAGGGAAATTTCTTCTGCAATTGAGGTTCCAACCAATAGTGCCTACCCTGCTTCTGCTAGCTGA 966 0.4689 MSMLGLRDLVLIAPTPSLHQHQHQHRHQHQHQHHGQPISADQSSNLPLPSPASLSVGFGIFPLLTATPCMPQPQNNEVQECGNNNNNNYWNLTMCPEVNPPKKGVINVDVDESHKLGMENEENGVYGADFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCNTHVKSTWIPSIRRREREIAVVAGDGGGGALGESGSSGTKRPKTLVGSSQNATATSLSSNSNDAGFKQCLPGHVRAPAVFRCHRVSAIGNGEDEVAYLATVHISGHVFKGFLYDHGVDGKDANAIPCVSELQLGNNCSGKNREISSAIEVPTNSAYPASAS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4358g00004 321 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 308 IPR007818 GO:0003700|GO:0006355
Gabi4358g00004 321 NCBIfam LRP1 C-terminal domain 230 277 IPR006511 -
Gabi4358g00004 321 NCBIfam putative zinc finger domain, LRP1 type 132 174 IPR006510 -
Gabi4358g00004 321 MobiDBLite consensus disorder prediction 197 221 - -
Gabi4358g00004 321 MobiDBLite consensus disorder prediction 184 221 - -
Gabi4358g00004 321 MobiDBLite consensus disorder prediction 35 49 - -
Gabi4358g00004 321 Pfam Domain of unknown function (DUF702) 132 278 - -
Gabi4358g00004 321 MobiDBLite consensus disorder prediction 18 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4358g00004 Gabi-Chr4358 32932 34684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4358g00004 1 316 C2H2 Transcription Factor Family AT5G12330 38.323 4.48e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gabi4358g00004 DUF702 2.6e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4358g00004 - - gmx:100806835 424.861