Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4358g00003 ATGAGCATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCAACCCCTTCTCTTCATCAACACCAACACCAACACCGACACCAACACCAACACCAACACCATGGCCAACCCATTTCAGCAGATCAAAGTTCAAACCTTCCTCTCCCTTCACCAGCTTCTCTCAGTGTTGGTTTTGGCATTTTTCCACTCTTAACTGCCACTCCTTGCATGCCACAGCCTCAAAACAATGAGGTTCAAGAGTGTGGCAACAACAACAACAACAACTATTGGAACCTCACGATGTGCCCAGAAGTGAATCCTCCAAAAAAGGGTGTGATCAACGTGGATGTTGATGAAAGCCACAAGCTTGGGATGGAGAATGAAGAAAACGGGGTTTATGGTGCTGACTTCAGAGTGTGTCAAGATTGTGGTAACAGGGCAAAGAAAGATTGCATCTTTAGAAGATGCAGGACTTGTTGCAAGGGACGTGGATATGACTGCAACACTCACGTGAAGAGCACGTGGATTCCTTCAATTCGCCGGCGGGAGCGGGAGATAGCGGTGGTTGCCGGTGATGGTGGTGGTGGTGCCCTGGGTGAAAGTGGTTCTTCTGGAACCAAGAGGCCAAAAACTTTAGTGGGGTCATCACAAAATGCCACTGCCACTTCTCTTAGTTCCAATTCTAATGGTAACACACCAAAGACCTTAGCTTCTAGCTTTTGTCACCAAGATGCTGGCTTCAAGCAGTGTTTACCAGGTCATGTTCGTGCACCTGCTGTGTTTAGGTGCCATAGAGTCTCTGCTATTGGCAATGGTGAAGATGAAGTTGCGTATTTGGCCACGGTTCATATTAGTGGCCATGTGTTCAAAGGGTTTCTCTATGATCATGGTGTTGATGGGAAAGATGCAAATGCAATTCCTTGTGTTTCAGAACTGCAATTGGGAAACAATTGCAGTGGCAAGAATAGGGAAATTTCTTCTGCAATTGAGGTTCCAACCAATAGTGCCTACCCTGCTTCTGCTAGCTGA 1008 0.4673 MSMLGLRDLVLIAPTPSLHQHQHQHRHQHQHQHHGQPISADQSSNLPLPSPASLSVGFGIFPLLTATPCMPQPQNNEVQECGNNNNNNYWNLTMCPEVNPPKKGVINVDVDESHKLGMENEENGVYGADFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCNTHVKSTWIPSIRRREREIAVVAGDGGGGALGESGSSGTKRPKTLVGSSQNATATSLSSNSNGNTPKTLASSFCHQDAGFKQCLPGHVRAPAVFRCHRVSAIGNGEDEVAYLATVHISGHVFKGFLYDHGVDGKDANAIPCVSELQLGNNCSGKNREISSAIEVPTNSAYPASAS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4358g00003 335 MobiDBLite consensus disorder prediction 197 224 - -
Gabi4358g00003 335 Pfam Domain of unknown function (DUF702) 132 292 - -
Gabi4358g00003 335 MobiDBLite consensus disorder prediction 35 49 - -
Gabi4358g00003 335 NCBIfam LRP1 C-terminal domain 244 291 IPR006511 -
Gabi4358g00003 335 NCBIfam putative zinc finger domain, LRP1 type 132 174 IPR006510 -
Gabi4358g00003 335 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 322 IPR007818 GO:0003700|GO:0006355
Gabi4358g00003 335 MobiDBLite consensus disorder prediction 184 224 - -
Gabi4358g00003 335 MobiDBLite consensus disorder prediction 18 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4358g00003 Gabi-Chr4358 32932 36765 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4358g00003 1 330 C2H2 Transcription Factor Family AT5G12330 38.922 4.84e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gabi4358g00003 DUF702 2.9e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4358g00003 - - gmx:100806835 454.521