Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4356g00002 ATGGAAACAGTACCTACTTGCTTCTTCTGCGGTAGAATCCCAGCAAAAAGTGAGCTTTTCCGTTATAACGCCTCTTATGTGCCCTTTTCTTCATTTGGTTCATTCTGTCTTTTAAACCGTAGTAATAATAATGCATATACCATGTCTCCAATGTGCTCTTTGTCACCTTCATTCGGCACCCATCGTCTCATTCGAAATGCAACTAACATCAGCTGTGAAATTAAGCAGCTTCCGAGTTACGCCAAGGGGAGAAGAAGAAGAGGGAAGAGAGAGAAACAAGAGGAAAGGGAACCCAATGAGAATGGAGACCCAATTGGGTGGAAGGAACTTGGGAAGAGTGTAGTGAGGTGGATTCGTCATAGCATGAGGGCTATGGCTTCTGATTTTGCTTCAGCTGAGTTAGAGGGTGAGTTTGAGTTCTCCGAGTTGAGGCAGAGAATGGGACCTGGTCTCACTTTTGTAATACAGGCTCAACCGTATTTGAATGCTGTTCCTATGCCGCTTGGACTTGAAGTTATCTGCTTGAAGGCTTGTGCTCATTATCCCACTCTTTTCGACCACTTTCAGAGGGAGCTTCGTGATGTTCTCCAAGATCTACAGAATAAATCCTTGGTCCAGGATTGGCGTGACACTCAGTCTTGGAAACTGCTTAAGGAGCTCGCCAATTCAGCTCAGCATAGAGCAGTTGCGAGAAAGATAGCGCAGCCCAAGACTGTCCAAGGAGTTTTAGGAATGGACATAGAAAAGGTCAAAGCAATACAGCACAGGATTGATGAGTTCACCAACCGCATGTCAGAATTACTCCGTATTGAAAGGGATGCTGAGTTGGAGTTTACTCAGGAAGAACTGGATGCTGTTCCTAAACCACCAGATGATACTTCTGATTCAACAAAACCGATTGAGTTCTTGGTTAGTCATAGCCAGCCACAGCAAGAACTCTGTGACACCATTTGTAATCTAAATGCCATCAGTACCTCTACAGGATTGGGGGGAATGCATTTGGTGCTATTCAAGGTTGAAGGGAACCACCGGTTACCACCTACTACTCTTTCACCTGGAGACATGGTTTGTGTGAGAACGTGTGACAACAGGGGTGCAGTTACAACTTCTTGCATGCAAGGATTTGTGAACAATCTTGGGGATGATGGCTATAGTATTAGTGTTGCTTTAGAGTCACTTCATGGTGATCCTACATTCTCTAAACTATTTGGGAAGAGTGTGCGCATTGACCGTATTCAAGGACTGGCTGATACACTTACTTATGAGCGCAACTGTGAAGCCCTAATGCTGCTTCAAAAGAATGGTTTACAAAAGAAGAACTCTTCAATTTCTGTTGTGGCTACACTGTTTGGAGATGGCGAAGATGTTGCATGGCTTGGAAATAATCATTTGGCTGACTGGGCAGAAGAAAAATTGAATGGAATATTAAGAAGTGAAACCTTTGATAATTCTCAGCAGAGAACAATTGCACTGGGTTTGAATAAGAAGCGGCCTGTATTGGTTATCCAAGGGCCTCCTGGTACAGGTAAGACTGGTCTGCTCAAGCAACTTATAGCATGTGCTGTTCAGCGAGGTGAAAGGGTTCTTGTTACAGCACCAACCAATGCAGCTGTTGATAACATGGTTGAAAAGCTTTCAAATGTTGGATTAAATATTGTGCGCGTTGGAAATCCAGCTCGTATATCAAAAACAGTGGGATCAAAATCTTTGGGAGAAATTGTAAATGCGAAGCTTTCAAGTTTTCGAGAAGAGTATGAGAGGAAGAAATCAGACCTAAGGAAAGATCTAAGTCATTGTTTAAGGGATGATTCACTAGCTGCGGGCATACGCCAACTTCTGAAACAGCTGGGAAGATCTCTAAAGAAAAAGGAAAAACAGACCATGATTGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACTAATACTGGAGCAGCTGATCCTTTGATTCGAAGGCTTGACAGTTTTGACTTGGTTGTCATAGATGAAGCTGGACAGGCAATTGAGCCCTCTTGTTGGATTCCTATATTGCAGGGAAAGCGCTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTATCTAGAAAGGCCTTAGAGGGTGGTCTAGGAATCTCTCTACTGGAGAGAGCTACAACTTTGCATGAAGGGATTCTCACCACCAGATTAACAACACAATACCGTATGAACGATGCAATTGCTAGTTGGGCTTCGAAGGAGATGTACGGAGGATTGTTGAAGTCCTCTGCGACCGTCTTCTCTCATCTTCTTGTTGACTCTCCTTTTGTTATGCCAACATGGATAACACAGTGCCCACTGCTATTGCTCGATACTAGAATGCCATATGGAAGTCTGTCAGTTGGTTGTGGAGAGCATCTAGACCCAGCTGGAACAGGCTCGTTTTATAATGAAGGAGAAGCTGATATAGTCTTGCAGCATGTCTTTTCCTTAATTTATGCTGGTGTTAGCCCTACTGCTATTGTAGTGCAATCCCCTTATGTCGCTCAAGTACAACTTTTGAGGAACATGCTTGATGAGTTTCCAGAAGCTGCAGGTACTGAGGTTGCCACAATTGATAGTTTTCAAGGTCGGGAAGCTGATGCAGTAATTTTGTCCATGGTACGTTCAAACACATTGGGAGCTGTTGGATTCCTTGGGGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCACGCAAACATTTAGCTGTGGTTTGTGACAGCTCAACTATATGCCACAATACCTTCTTAGCAAGAGTTCTGCGTCATATACGACACTTTGGTAGGGTGAAGCATGCAGAACCAGGTAGTTTTGGAGAGTCTGGACTTGGGATGAATCCAATACTACCTTCCATTAATTAG 2868 0.4369 METVPTCFFCGRIPAKSELFRYNASYVPFSSFGSFCLLNRSNNNAYTMSPMCSLSPSFGTHRLIRNATNISCEIKQLPSYAKGRRRRGKREKQEEREPNENGDPIGWKELGKSVVRWIRHSMRAMASDFASAELEGEFEFSELRQRMGPGLTFVIQAQPYLNAVPMPLGLEVICLKACAHYPTLFDHFQRELRDVLQDLQNKSLVQDWRDTQSWKLLKELANSAQHRAVARKIAQPKTVQGVLGMDIEKVKAIQHRIDEFTNRMSELLRIERDAELEFTQEELDAVPKPPDDTSDSTKPIEFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRTCDNRGAVTTSCMQGFVNNLGDDGYSISVALESLHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLQKKNSSISVVATLFGDGEDVAWLGNNHLADWAEEKLNGILRSETFDNSQQRTIALGLNKKRPVLVIQGPPGTGKTGLLKQLIACAVQRGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPARISKTVGSKSLGEIVNAKLSSFREEYERKKSDLRKDLSHCLRDDSLAAGIRQLLKQLGRSLKKKEKQTMIEVLSSAQVVLATNTGAADPLIRRLDSFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGISLLERATTLHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSATVFSHLLVDSPFVMPTWITQCPLLLLDTRMPYGSLSVGCGEHLDPAGTGSFYNEGEADIVLQHVFSLIYAGVSPTAIVVQSPYVAQVQLLRNMLDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLAVVCDSSTICHNTFLARVLRHIRHFGRVKHAEPGSFGESGLGMNPILPSIN 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4356g00002 955 Gene3D - 729 937 IPR027417 -
Gabi4356g00002 955 Pfam AAA domain 481 697 IPR041677 GO:0004386
Gabi4356g00002 955 MobiDBLite consensus disorder prediction 88 103 - -
Gabi4356g00002 955 Gene3D - 294 415 - -
Gabi4356g00002 955 SMART AAA_5 496 711 IPR003593 GO:0016887
Gabi4356g00002 955 CDD DEXXQc_SMUBP2 481 730 - -
Gabi4356g00002 955 FunFam DNA helicase A 729 937 - -
Gabi4356g00002 955 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 145 939 - -
Gabi4356g00002 955 Pfam AAA domain 707 910 IPR041679 -
Gabi4356g00002 955 FunFam DNA-binding protein SMUBP-2 isoform X2 283 415 - -
Gabi4356g00002 955 Gene3D - 264 713 IPR027417 -
Gabi4356g00002 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 917 IPR027417 -
Gabi4356g00002 955 Coils Coil 582 602 - -
Gabi4356g00002 955 Coils Coil 257 277 - -
Gabi4356g00002 955 MobiDBLite consensus disorder prediction 81 105 - -
Gabi4356g00002 955 CDD SF1_C_Upf1 731 927 IPR047187 -
Gabi4356g00002 955 SMART ultradead3 477 729 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4356g00002 Gabi-Chr4356 28174 43836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4356g00002 467 670 Core DNA Replication Machinery Family AT1G08840 26.699 1.60e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4356g00002 - - aip:107625008 1568.9