Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4355g00007 ATGGAGACAAGGTACACGACCGGTGTTCACGTGACTAGAAGTTTATCAGATTGTGGCTCAGCAGCAACATATGGAAGTGAAGAGATGGTAATAAGGAAAGGTCCATGGACAGAGGAAGAGGATTCTGTTCTGATCAACTACATCACTGTCCACGGAGAAAGTCAGTGGAACTCCGTCGCTCGCTGTGCAGGTCTAAAGCGAACGGGCAAAAGCTGCAGACTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAACATCACCCTTCAAGAACAGCTCTTGATTCTTGACCTCCATTTCCGATGGGGAAATAGGTGGTCAAAAATAGCAGAACAATTGCCTGGCAGAACAGACAATGAGATCAAGAACTATTGGAGGACCAGAGTAGTGAAGCAAGCTAAGCAACTCAAATGTGATGTCAATAGCAAACAATTCAGGGACACTTTGCGTCTTGTATGGATGCCCCGCTTGATGGAGCAGATCCAGGCCTCTTGTGGGACTGGTCCTTCCCATGGTCAAGCCCAAACCACCTTATGCAACACTCAAGCACACAGTGAATCATGTGGACCAAATCTCCGCATGTTGTCTGTGGCTTCATCGTACTCAACAGGAGTTGATGTTCAAGCTCCCTCTCTCTCTGATTCAAGCGTGTCTTACAATTTAATGGGTGGTGGTAATTGGCCAGAGAATGCAGAAAAGGGACCCACATCCACCCCATGGCAGCAGAGGGACTACTCGGACAATGGTTTTGGTGGTGCAGACTTGTGGACGGATGAAAACTTGTGGTTCTTGCAACAACAGCTTGCTGATGATCTATGA 825 0.4752 METRYTTGVHVTRSLSDCGSAATYGSEEMVIRKGPWTEEEDSVLINYITVHGESQWNSVARCAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHFRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRLVWMPRLMEQIQASCGTGPSHGQAQTTLCNTQAHSESCGPNLRMLSVASSYSTGVDVQAPSLSDSSVSYNLMGGGNWPENAEKGPTSTPWQQRDYSDNGFGGADLWTDENLWFLQQQLADDL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4355g00007 274 Gene3D - 90 131 - -
Gabi4355g00007 274 ProSiteProfiles Myb-like domain profile. 28 80 IPR001005 -
Gabi4355g00007 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 135 IPR017930 -
Gabi4355g00007 274 MobiDBLite consensus disorder prediction 225 244 - -
Gabi4355g00007 274 SMART sant 32 82 IPR001005 -
Gabi4355g00007 274 SMART sant 85 133 IPR001005 -
Gabi4355g00007 274 FunFam Myb transcription factor 33 85 - -
Gabi4355g00007 274 CDD SANT 35 80 IPR001005 -
Gabi4355g00007 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 84 IPR017930 -
Gabi4355g00007 274 Gene3D - 33 85 - -
Gabi4355g00007 274 Pfam Myb-like DNA-binding domain 86 129 IPR001005 -
Gabi4355g00007 274 Pfam Myb-like DNA-binding domain 33 80 IPR001005 -
Gabi4355g00007 274 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Gabi4355g00007 274 CDD SANT 90 129 IPR001005 -
Gabi4355g00007 274 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Gabi4355g00007 274 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 29 198 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi4355g00007 274 FunFam MYB transcription factor 90 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4355g00007 Gabi-Chr4355 72593 73642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4355g00007 27 273 MYB Transcription Factor Family AT2G47190 47.744 5.13e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4355g00007 Myb_DNA-binding 4.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4355g00007 K09422 - gmx:778040 369.777