Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4355g00006 ATGGTTCCTAAAACCCATTTCCAAGCTATTCTTTTTCTTCTTTCATCTTTATACATCACTTCCAGCATCAGCATTGATAGGGTGGCCGATTATGACAAGTGGATATCATGGAATGTCAAGACTTATCAGAAAAGGACCATTTTGGAAACCAAAAGGAACGTGGCTGCAACTGGTGCTGTTGGGCAGGCTCTAGATTTGAAGCTGAGGCAGGCTGAGAGTAACAAAGTTACAATAACAGTTAGCCAAGACGGTGCTGGTGACTTTAAGACCATTACAGAAGCTCTCAATAGCATTCCACCACGCAACACTAGGAGAGTCATAGTGTTGATTGCACCAGGTGTTTATAGGGAGAAGGTAATGATCCCAAGAACATTGCCTTTCATTACATTATTAGGGGACGCCAGGGGGATACCAACCATAACGGGAAATGATACAGCTTCTGTCACTGGAAGAGATGGGACTCCGTTAGGGACGTTCCAGAGTGCAACTGTTGCCGTGGATGCTAGTTATTTTATTGCCATCAACATAAAATTTGAGAATACTGCACCGCATAGCATTGGATTGGTGGGGGAACAAGCCGTGGCGTTTCGCATCTCAGGAACGAAAGCTGCCTTTTACAATTGCAGTTTCTATGGGGCTCAAGACACTCTGTACGATCACAAAGGCCTCCACTACTTCAACAATTGCTTTATTCAAGGCTCTGTTGATTTCATCTTCGGCTCTGGCAGGTCCCTTTACGAGAACTGCTATGTAAATTCTATAACCAAGAAGGTGGCCTCCATCACTGCTCAAAAGCGTACAAATTCGACATTGGAGAGTGGATTTTCGTTCAAAAACGGCGTAGTAACAGGTAGTGGACAGGTTTATCTCGGAAGAGCATGGGGAGAATATTCCAGAGTTGTTTACTCTTACACCTACTTGGACACAATAGTTCTACCCAAAGGATGGAGTGATTGGGGTGACCAAAAACGTGACTTGAGGGTATATTATGGAGAATACAAGTGTAGTGGGCCAGGGGCTAACTTGACGGGAAGAGTGCCCTGGGCAAGAATGCTAACGGATGAAGAGGCCAAGCCTTTTATTGGGATTCACTTCATTGAAGGAGACACTTGGCTCATTAGTCCCTTCGCCTATCCAATTTAA 1143 0.4462 MVPKTHFQAILFLLSSLYITSSISIDRVADYDKWISWNVKTYQKRTILETKRNVAATGAVGQALDLKLRQAESNKVTITVSQDGAGDFKTITEALNSIPPRNTRRVIVLIAPGVYREKVMIPRTLPFITLLGDARGIPTITGNDTASVTGRDGTPLGTFQSATVAVDASYFIAINIKFENTAPHSIGLVGEQAVAFRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGSGRSLYENCYVNSITKKVASITAQKRTNSTLESGFSFKNGVVTGSGQVYLGRAWGEYSRVVYSYTYLDTIVLPKGWSDWGDQKRDLRVYYGEYKCSGPGANLTGRVPWARMLTDEEAKPFIGIHFIEGDTWLISPFAYPI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4355g00006 380 SUPERFAMILY Pectin lyase-like 75 372 IPR011050 -
Gabi4355g00006 380 ProSitePatterns Pectinesterase signature 2. 231 240 IPR033131 -
Gabi4355g00006 380 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 69 372 - -
Gabi4355g00006 380 Gene3D - 71 376 IPR012334 -
Gabi4355g00006 380 FunFam Pectinesterase 73 374 - -
Gabi4355g00006 380 Pfam Pectinesterase 78 369 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4355g00006 Gabi-Chr4355 52716 55043 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4355g00006 73 372 Carbohydrate Esterase AT5G47500 48.675 1.04e-98 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4355g00006 K01051 - qsu:112011696 573.548