Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4355g00004 ATGGATGCGAAGGACATCCTGGGATTACCCAAAAATTCCTTCCCACCTCTGGAGAAGAAGTCTCGACCTCAGAAAGAATCTCAGAGAAAACCAGATGGCATTTCGCGGGAGGTGTATGCGCTTACGGGTGGATTGGCACCTCTTATGCCTGCTGTTGATTCGTCTCAATTGAAAAAAAGGCCTCCATCAGATGAAAAGATCACTTGGCAATGGCTTCCTTTCACAAATTCTGCTCGTAAAGATGATCTTCAGCTTTTCCATTGGGTCCGAGTTATAAATGGTGTTCCTCCAGCAGGGGACTATTCTTTTGCTAAGTATAACAAGTCTGTTGACATAACAAGATACACAGATGAGGAGTATGAGAAGTATTTGACAGATTCTAAATGGACCAAGGAGGAGACAGATCAACTGTTTGACTTGTGTGAGAGATTTGATCTCCGATTTATTGCAATAGCTGATAGGTTCCCATCATCTCGAACTATAGAAGAATTAAAGGATCGATATTATAGCGTATCCCGGGCTATATTAATTGCTAGGAATCCATCTTCTGGGGATGTTGCAGTGCATTCGCATGTTAAGGAACCATATAATGTTTCACAAGAGATGGAGCGGAAACAAGCTCTGTCCCTGTTCCTCTCTCAAACAAGGCAACAAGAGCGAAGAGATGAAGAGGTGCTTGCTGAAGCAAAAAGAATAATCGAGTCACGCATACCTACCAAGGTAGCTGAGGAGTCTGAGTTGGCTGTTGCTTCGAATGCTGGTGCAGATGTTACAGAGCGGGCTATTCCTGGTGAAACTGTATCTCCATCAAATATGCAACTTCCACCAATAGTTGTGCCTTCCACAATAGCAACAGATAATGCATCTACACTAGCTTCTCTTCGCATTCTTCGTGTGTATCTGAGAACCTATGCACTTGAGCAAATGGTGCAATCTGCAAGCTCATCTGCCGGACTTCGGACTATCAAACGGGTTGAGCAAACTTTGCAGGAACTCGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTTGAACTGAGAAAAGAAATACTAACTCTGTTGAATCTTCAGAAACAGCTGCAATATAAGGAGGCTGAAGGTTCGTCTTTTCGTGATGGATCATACGGTGAAACACCAGGAACACCAAAGCGTTTGCATCGTGGTGGGGATCAGGATCGGACATTTGTTCCAGACAACACAAATTTTGGAGGGGAAAGGATTGGCAAAAGGGATCAAAAGCGCAAGGTGCCTCCATCATCACCAGCTCAATCTAAAAGACCTAGAAAACTAAAGGCATCAGATCTTTAG 1326 0.4382 MDAKDILGLPKNSFPPLEKKSRPQKESQRKPDGISREVYALTGGLAPLMPAVDSSQLKKRPPSDEKITWQWLPFTNSARKDDLQLFHWVRVINGVPPAGDYSFAKYNKSVDITRYTDEEYEKYLTDSKWTKEETDQLFDLCERFDLRFIAIADRFPSSRTIEELKDRYYSVSRAILIARNPSSGDVAVHSHVKEPYNVSQEMERKQALSLFLSQTRQQERRDEEVLAEAKRIIESRIPTKVAEESELAVASNAGADVTERAIPGETVSPSNMQLPPIVVPSTIATDNASTLASLRILRVYLRTYALEQMVQSASSSAGLRTIKRVEQTLQELGVNLKPRVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSFRDGSYGETPGTPKRLHRGGDQDRTFVPDNTNFGGERIGKRDQKRKVPPSSPAQSKRPRKLKASDL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4355g00004 441 SMART sant 125 174 IPR001005 -
Gabi4355g00004 441 CDD SANT_DMAP1_like 129 171 - -
Gabi4355g00004 441 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 315 377 IPR008468 GO:0005634|GO:0045892
Gabi4355g00004 441 SUPERFAMILY Homeodomain-like 125 175 IPR009057 -
Gabi4355g00004 441 MobiDBLite consensus disorder prediction 1 34 - -
Gabi4355g00004 441 Gene3D - 98 184 - -
Gabi4355g00004 441 MobiDBLite consensus disorder prediction 371 441 - -
Gabi4355g00004 441 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
Gabi4355g00004 441 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 1 433 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Gabi4355g00004 441 FunFam DNA methyltransferase 1-associated protein 1 97 184 - -
Gabi4355g00004 441 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4355g00004 Gabi-Chr4355 13559 21532 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi4355g00004 DMAP1 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4355g00004 K11324 - gmx:100818926 725.702